# TARGET T0303 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0303.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 29.7784 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 N 0.001 0.003 0.005 0.097 0.075 0.818 2 S 0.004 0.007 0.008 0.397 0.065 0.519 3 L 0.002 0.003 0.007 0.697 0.042 0.249 4 P 0.002 0.004 0.008 0.855 0.031 0.100 5 D 0.001 0.001 0.009 0.965 0.012 0.012 6 L 0.001 0.001 0.006 0.989 0.004 0.001 7 A 0.001 0.001 0.003 0.993 0.003 0.001 8 L 0.001 0.001 0.003 0.993 0.003 0.001 9 S 0.001 0.001 0.002 0.994 0.002 0.001 10 I 0.001 0.001 0.002 0.994 0.002 0.001 11 N 0.001 0.001 0.002 0.994 0.002 0.001 12 S 0.001 0.001 0.003 0.990 0.005 0.002 13 A 0.001 0.001 0.003 0.984 0.006 0.006 14 L 0.001 0.001 0.008 0.976 0.010 0.005 15 K 0.001 0.001 0.014 0.957 0.018 0.011 16 D 0.001 0.001 0.018 0.912 0.042 0.027 17 V 0.001 0.001 0.019 0.811 0.068 0.101 18 N 0.001 0.001 0.004 0.036 0.107 0.851 19 L 0.002 0.004 0.006 0.003 0.269 0.716 20 P 0.007 0.004 0.023 0.006 0.383 0.577 21 Q 0.022 0.024 0.048 0.016 0.404 0.486 22 A 0.030 0.030 0.014 0.026 0.306 0.593 23 S 0.013 0.007 0.003 0.026 0.075 0.876 24 E 0.001 0.001 0.022 0.969 0.006 0.003 25 N 0.001 0.001 0.034 0.947 0.015 0.003 26 L 0.003 0.001 0.029 0.949 0.016 0.002 27 V 0.018 0.002 0.010 0.938 0.021 0.011 28 M 0.017 0.002 0.009 0.932 0.026 0.014 29 T 0.021 0.001 0.007 0.919 0.028 0.024 30 W 0.026 0.004 0.004 0.904 0.026 0.036 31 I 0.028 0.013 0.005 0.873 0.032 0.050 32 G 0.028 0.007 0.009 0.386 0.340 0.230 33 N 0.004 0.002 0.009 0.311 0.289 0.385 34 G 0.002 0.002 0.009 0.590 0.159 0.238 35 A 0.001 0.001 0.002 0.979 0.011 0.007 36 D 0.001 0.001 0.002 0.988 0.005 0.004 37 V 0.002 0.001 0.002 0.989 0.004 0.003 38 L 0.002 0.001 0.007 0.986 0.004 0.002 39 S 0.002 0.001 0.007 0.985 0.004 0.001 40 Q 0.002 0.001 0.008 0.979 0.007 0.003 41 R 0.002 0.001 0.007 0.978 0.009 0.004 42 A 0.003 0.001 0.007 0.955 0.018 0.015 43 V 0.003 0.001 0.012 0.939 0.027 0.018 44 D 0.004 0.001 0.023 0.911 0.040 0.022 45 W 0.005 0.001 0.022 0.885 0.049 0.038 46 A 0.005 0.001 0.026 0.871 0.043 0.053 47 C 0.008 0.004 0.027 0.836 0.051 0.074 48 T 0.013 0.003 0.029 0.684 0.086 0.185 49 Q 0.010 0.002 0.029 0.764 0.096 0.099 50 A 0.010 0.002 0.027 0.776 0.101 0.083 51 E 0.026 0.005 0.078 0.527 0.220 0.143 52 K 0.059 0.007 0.092 0.427 0.218 0.197 53 E 0.069 0.023 0.075 0.263 0.221 0.349 54 L 0.030 0.019 0.014 0.156 0.172 0.610 55 T 0.005 0.002 0.001 0.037 0.057 0.898 56 E 0.001 0.001 0.008 0.982 0.006 0.004 57 D 0.001 0.001 0.014 0.978 0.007 0.001 58 E 0.001 0.001 0.015 0.977 0.007 0.001 59 F 0.001 0.001 0.003 0.988 0.004 0.004 60 K 0.001 0.001 0.002 0.994 0.002 0.002 61 Y 0.001 0.001 0.002 0.993 0.002 0.002 62 F 0.001 0.001 0.002 0.993 0.003 0.002 63 K 0.001 0.001 0.002 0.993 0.003 0.001 64 R 0.001 0.001 0.003 0.990 0.004 0.002 65 Q 0.001 0.001 0.003 0.983 0.006 0.007 66 F 0.001 0.001 0.006 0.974 0.011 0.008 67 G 0.002 0.001 0.023 0.943 0.024 0.007 68 F 0.002 0.001 0.028 0.925 0.034 0.010 69 Y 0.003 0.001 0.020 0.927 0.030 0.020 70 Y 0.003 0.002 0.019 0.910 0.034 0.032 71 G 0.005 0.001 0.065 0.823 0.068 0.038 72 E 0.009 0.001 0.091 0.703 0.133 0.063 73 N 0.028 0.008 0.106 0.603 0.171 0.085 74 L 0.029 0.006 0.079 0.605 0.172 0.107 75 C 0.050 0.003 0.118 0.527 0.189 0.113 76 N 0.074 0.006 0.096 0.487 0.159 0.178 77 I 0.094 0.014 0.036 0.309 0.151 0.395 78 S 0.042 0.014 0.006 0.149 0.088 0.700 79 R 0.008 0.001 0.001 0.051 0.045 0.893