# TARGET T0303 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0303.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 29.7784 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 N 0.001 0.022 0.545 0.001 0.029 0.087 0.001 0.001 0.006 0.172 0.116 0.005 0.016 2 S 0.001 0.059 0.571 0.001 0.026 0.144 0.001 0.001 0.011 0.113 0.058 0.003 0.015 3 L 0.001 0.003 0.094 0.001 0.018 0.766 0.001 0.001 0.001 0.071 0.045 0.001 0.001 4 P 0.001 0.001 0.031 0.001 0.006 0.930 0.001 0.001 0.001 0.014 0.018 0.001 0.001 5 D 0.001 0.001 0.012 0.001 0.002 0.977 0.001 0.001 0.001 0.004 0.004 0.001 0.001 6 L 0.001 0.001 0.004 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.002 0.001 0.001 7 A 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 8 L 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 9 S 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.002 0.001 0.001 10 I 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.003 0.001 0.001 11 N 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.003 0.001 0.001 12 S 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.003 0.001 0.001 13 A 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.004 0.001 0.001 14 L 0.001 0.001 0.001 0.001 0.001 0.990 0.001 0.001 0.001 0.001 0.008 0.001 0.001 15 K 0.001 0.001 0.001 0.001 0.003 0.976 0.001 0.001 0.001 0.001 0.019 0.001 0.001 16 D 0.001 0.001 0.002 0.001 0.006 0.904 0.001 0.001 0.001 0.002 0.086 0.001 0.001 17 V 0.001 0.001 0.011 0.001 0.009 0.559 0.001 0.001 0.001 0.016 0.404 0.001 0.001 18 N 0.001 0.004 0.110 0.001 0.010 0.077 0.001 0.001 0.001 0.058 0.741 0.001 0.001 19 L 0.001 0.004 0.770 0.001 0.002 0.005 0.001 0.001 0.001 0.202 0.013 0.001 0.001 20 P 0.001 0.009 0.797 0.001 0.013 0.006 0.001 0.001 0.001 0.115 0.054 0.001 0.003 21 Q 0.001 0.026 0.688 0.001 0.037 0.021 0.001 0.001 0.004 0.097 0.113 0.003 0.011 22 A 0.001 0.030 0.668 0.001 0.023 0.042 0.001 0.001 0.005 0.161 0.055 0.009 0.007 23 S 0.001 0.008 0.795 0.001 0.015 0.066 0.001 0.001 0.003 0.073 0.020 0.002 0.016 24 E 0.001 0.001 0.027 0.001 0.100 0.795 0.001 0.001 0.001 0.023 0.050 0.001 0.002 25 N 0.001 0.001 0.022 0.001 0.075 0.798 0.001 0.001 0.001 0.020 0.072 0.004 0.003 26 L 0.004 0.004 0.020 0.001 0.091 0.804 0.001 0.001 0.010 0.010 0.038 0.003 0.013 27 V 0.004 0.006 0.046 0.003 0.034 0.837 0.002 0.005 0.018 0.010 0.014 0.005 0.017 28 M 0.007 0.002 0.023 0.016 0.059 0.805 0.003 0.007 0.023 0.014 0.021 0.011 0.010 29 T 0.007 0.002 0.015 0.007 0.061 0.757 0.003 0.018 0.025 0.026 0.051 0.006 0.022 30 W 0.008 0.005 0.036 0.001 0.062 0.703 0.004 0.014 0.021 0.023 0.096 0.008 0.017 31 I 0.002 0.038 0.159 0.001 0.028 0.481 0.003 0.021 0.076 0.078 0.090 0.009 0.012 32 G 0.001 0.006 0.283 0.002 0.036 0.351 0.001 0.004 0.021 0.151 0.135 0.003 0.007 33 N 0.001 0.003 0.063 0.001 0.013 0.629 0.001 0.002 0.002 0.117 0.167 0.001 0.002 34 G 0.001 0.002 0.078 0.001 0.018 0.709 0.001 0.001 0.001 0.034 0.157 0.001 0.001 35 A 0.001 0.003 0.120 0.001 0.003 0.836 0.001 0.001 0.003 0.019 0.011 0.001 0.003 36 D 0.001 0.001 0.016 0.001 0.004 0.950 0.001 0.001 0.001 0.021 0.006 0.001 0.001 37 V 0.001 0.001 0.002 0.001 0.001 0.983 0.001 0.002 0.004 0.001 0.004 0.001 0.001 38 L 0.001 0.001 0.002 0.001 0.001 0.982 0.001 0.001 0.001 0.001 0.010 0.001 0.001 39 S 0.001 0.001 0.006 0.001 0.001 0.975 0.001 0.001 0.001 0.003 0.012 0.001 0.001 40 Q 0.001 0.001 0.004 0.001 0.002 0.980 0.001 0.001 0.001 0.002 0.009 0.001 0.001 41 R 0.001 0.001 0.005 0.001 0.002 0.976 0.001 0.001 0.001 0.003 0.013 0.001 0.001 42 A 0.002 0.001 0.010 0.001 0.005 0.953 0.001 0.001 0.001 0.005 0.022 0.001 0.002 43 V 0.002 0.002 0.017 0.001 0.008 0.931 0.001 0.001 0.001 0.009 0.024 0.002 0.003 44 D 0.003 0.001 0.013 0.001 0.013 0.908 0.001 0.001 0.001 0.010 0.044 0.002 0.004 45 W 0.001 0.001 0.016 0.001 0.010 0.903 0.001 0.001 0.001 0.015 0.048 0.002 0.002 46 A 0.001 0.002 0.035 0.001 0.012 0.884 0.001 0.001 0.002 0.012 0.046 0.002 0.003 47 C 0.002 0.004 0.045 0.001 0.022 0.851 0.001 0.001 0.003 0.021 0.040 0.003 0.007 48 T 0.004 0.005 0.066 0.004 0.042 0.741 0.001 0.001 0.006 0.038 0.067 0.014 0.011 49 Q 0.004 0.005 0.080 0.001 0.068 0.625 0.001 0.001 0.010 0.043 0.131 0.007 0.026 50 A 0.001 0.007 0.115 0.001 0.045 0.524 0.001 0.001 0.007 0.052 0.235 0.007 0.007 51 E 0.001 0.011 0.284 0.002 0.049 0.233 0.001 0.001 0.004 0.150 0.249 0.004 0.012 52 K 0.001 0.007 0.251 0.001 0.043 0.136 0.001 0.001 0.004 0.338 0.187 0.015 0.014 53 E 0.001 0.026 0.510 0.001 0.029 0.101 0.001 0.001 0.004 0.125 0.165 0.007 0.029 54 L 0.001 0.052 0.613 0.001 0.004 0.037 0.001 0.001 0.003 0.242 0.034 0.008 0.006 55 T 0.001 0.003 0.908 0.001 0.001 0.030 0.001 0.001 0.001 0.051 0.003 0.001 0.004 56 E 0.001 0.001 0.001 0.001 0.010 0.981 0.001 0.001 0.001 0.001 0.007 0.001 0.001 57 D 0.001 0.001 0.001 0.001 0.011 0.981 0.001 0.001 0.001 0.001 0.007 0.001 0.001 58 E 0.001 0.001 0.001 0.001 0.018 0.976 0.001 0.001 0.001 0.001 0.005 0.001 0.001 59 F 0.001 0.001 0.003 0.001 0.003 0.992 0.001 0.001 0.001 0.001 0.002 0.001 0.001 60 K 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.004 0.001 0.001 61 Y 0.001 0.001 0.001 0.001 0.001 0.986 0.001 0.001 0.001 0.001 0.011 0.001 0.001 62 F 0.001 0.001 0.002 0.001 0.001 0.983 0.001 0.001 0.001 0.002 0.012 0.001 0.001 63 K 0.001 0.001 0.005 0.001 0.001 0.985 0.001 0.001 0.001 0.003 0.005 0.001 0.001 64 R 0.001 0.001 0.001 0.001 0.001 0.990 0.001 0.001 0.001 0.001 0.007 0.001 0.001 65 Q 0.001 0.001 0.001 0.001 0.001 0.983 0.001 0.001 0.001 0.001 0.014 0.001 0.001 66 F 0.001 0.001 0.003 0.001 0.003 0.973 0.001 0.001 0.001 0.002 0.019 0.001 0.001 67 G 0.001 0.001 0.004 0.001 0.013 0.959 0.001 0.001 0.001 0.004 0.020 0.001 0.001 68 F 0.001 0.001 0.004 0.001 0.020 0.940 0.001 0.001 0.001 0.003 0.032 0.001 0.001 69 Y 0.001 0.001 0.004 0.001 0.018 0.933 0.001 0.001 0.001 0.005 0.037 0.001 0.001 70 Y 0.001 0.002 0.015 0.001 0.013 0.908 0.001 0.001 0.001 0.015 0.045 0.001 0.001 71 G 0.001 0.001 0.017 0.001 0.035 0.836 0.001 0.001 0.001 0.015 0.091 0.001 0.001 72 E 0.001 0.001 0.017 0.001 0.044 0.791 0.001 0.001 0.001 0.021 0.122 0.001 0.001 73 N 0.001 0.003 0.049 0.001 0.063 0.702 0.001 0.001 0.002 0.036 0.139 0.001 0.003 74 L 0.001 0.013 0.114 0.001 0.065 0.573 0.001 0.001 0.004 0.051 0.166 0.004 0.007 75 C 0.003 0.012 0.133 0.006 0.102 0.424 0.001 0.001 0.004 0.090 0.203 0.007 0.014 76 N 0.005 0.010 0.162 0.004 0.131 0.338 0.001 0.001 0.006 0.111 0.201 0.016 0.014 77 I 0.003 0.013 0.216 0.001 0.077 0.319 0.001 0.001 0.004 0.126 0.209 0.008 0.022 78 S 0.002 0.018 0.634 0.002 0.019 0.116 0.001 0.001 0.004 0.079 0.099 0.005 0.022 79 R 0.001 0.006 0.840 0.002 0.014 0.032 0.001 0.001 0.001 0.071 0.019 0.008 0.005