# TARGET T0303 # Using neural net dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-n_notor2-from-empty.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 n_notor2 ) # The input amino acid frequencies were determined from # alignment T0303.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 29.7784 # Pos AA G H I P A B S F J M N 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 N 0.058 0.015 0.005 0.027 0.013 0.032 0.063 0.002 0.001 0.003 0.783 2 S 0.071 0.006 0.004 0.011 0.006 0.008 0.077 0.002 0.001 0.003 0.813 3 L 0.184 0.008 0.011 0.017 0.004 0.010 0.137 0.001 0.001 0.007 0.620 4 P 0.004 0.002 0.001 0.003 0.001 0.001 0.025 0.001 0.001 0.001 0.964 5 D 0.013 0.008 0.001 0.004 0.001 0.002 0.192 0.001 0.001 0.001 0.777 6 L 0.074 0.155 0.001 0.004 0.001 0.003 0.169 0.001 0.001 0.005 0.587 7 A 0.016 0.761 0.001 0.003 0.001 0.003 0.085 0.002 0.001 0.002 0.127 8 L 0.014 0.850 0.001 0.001 0.001 0.001 0.044 0.002 0.001 0.001 0.088 9 S 0.015 0.969 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.001 0.012 10 I 0.002 0.994 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 11 N 0.001 0.993 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.003 12 S 0.003 0.988 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.007 13 A 0.006 0.984 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.005 14 L 0.010 0.974 0.003 0.001 0.001 0.001 0.001 0.008 0.001 0.001 0.004 15 K 0.005 0.987 0.002 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.003 16 D 0.033 0.930 0.001 0.001 0.001 0.001 0.001 0.018 0.001 0.001 0.018 17 V 0.146 0.708 0.003 0.001 0.001 0.001 0.001 0.116 0.001 0.001 0.027 18 N 0.369 0.214 0.045 0.001 0.001 0.001 0.004 0.294 0.001 0.002 0.069 19 L 0.027 0.017 0.823 0.003 0.001 0.001 0.006 0.005 0.001 0.001 0.116 20 P 0.001 0.001 0.002 0.005 0.001 0.001 0.004 0.001 0.001 0.001 0.986 21 Q 0.114 0.002 0.004 0.031 0.001 0.002 0.044 0.001 0.001 0.003 0.797 22 A 0.325 0.012 0.009 0.076 0.005 0.010 0.108 0.001 0.001 0.008 0.446 23 S 0.094 0.022 0.001 0.064 0.011 0.011 0.315 0.001 0.001 0.003 0.477 24 E 0.018 0.009 0.001 0.021 0.001 0.003 0.030 0.001 0.001 0.002 0.916 25 N 0.024 0.030 0.001 0.021 0.010 0.017 0.428 0.001 0.001 0.016 0.453 26 L 0.088 0.075 0.002 0.019 0.021 0.044 0.596 0.006 0.001 0.049 0.102 27 V 0.069 0.766 0.004 0.022 0.022 0.038 0.010 0.004 0.001 0.002 0.063 28 M 0.012 0.814 0.001 0.026 0.031 0.070 0.005 0.004 0.001 0.001 0.035 29 T 0.049 0.667 0.002 0.008 0.021 0.037 0.008 0.017 0.001 0.001 0.190 30 W 0.128 0.649 0.005 0.034 0.043 0.034 0.004 0.038 0.001 0.001 0.066 31 I 0.034 0.750 0.013 0.040 0.039 0.047 0.015 0.014 0.001 0.001 0.046 32 G 0.050 0.385 0.012 0.039 0.065 0.129 0.067 0.022 0.001 0.004 0.227 33 N 0.087 0.221 0.016 0.030 0.018 0.060 0.171 0.016 0.001 0.005 0.377 34 G 0.323 0.043 0.026 0.014 0.005 0.007 0.106 0.020 0.001 0.017 0.439 35 A 0.096 0.022 0.637 0.016 0.004 0.008 0.072 0.001 0.001 0.010 0.136 36 D 0.007 0.029 0.005 0.057 0.020 0.027 0.178 0.002 0.001 0.001 0.674 37 V 0.032 0.097 0.001 0.026 0.008 0.007 0.049 0.001 0.001 0.002 0.777 38 L 0.007 0.596 0.001 0.008 0.005 0.009 0.045 0.001 0.001 0.001 0.328 39 S 0.006 0.602 0.001 0.013 0.017 0.047 0.225 0.003 0.001 0.003 0.085 40 Q 0.018 0.916 0.001 0.006 0.002 0.008 0.008 0.002 0.001 0.001 0.037 41 R 0.006 0.978 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 42 A 0.008 0.962 0.001 0.001 0.001 0.001 0.001 0.006 0.001 0.001 0.023 43 V 0.021 0.963 0.001 0.001 0.001 0.001 0.001 0.005 0.001 0.001 0.009 44 D 0.020 0.930 0.015 0.001 0.001 0.001 0.001 0.009 0.001 0.001 0.024 45 W 0.041 0.919 0.005 0.001 0.001 0.001 0.001 0.007 0.001 0.001 0.025 46 A 0.082 0.765 0.011 0.001 0.001 0.001 0.006 0.031 0.001 0.001 0.101 47 C 0.038 0.745 0.052 0.005 0.006 0.006 0.013 0.017 0.001 0.001 0.115 48 T 0.054 0.650 0.015 0.013 0.009 0.016 0.032 0.031 0.001 0.002 0.178 49 Q 0.137 0.517 0.021 0.016 0.009 0.013 0.027 0.026 0.001 0.003 0.231 50 A 0.123 0.514 0.023 0.022 0.014 0.021 0.033 0.021 0.001 0.004 0.225 51 E 0.118 0.276 0.029 0.032 0.034 0.044 0.075 0.031 0.001 0.008 0.354 52 K 0.156 0.144 0.026 0.024 0.010 0.017 0.065 0.023 0.001 0.006 0.529 53 E 0.256 0.075 0.024 0.016 0.005 0.009 0.118 0.031 0.001 0.011 0.455 54 L 0.324 0.046 0.120 0.032 0.008 0.013 0.126 0.014 0.001 0.020 0.297 55 T 0.100 0.019 0.013 0.014 0.004 0.007 0.440 0.008 0.001 0.006 0.389 56 E 0.007 0.004 0.003 0.003 0.001 0.001 0.023 0.001 0.001 0.001 0.957 57 D 0.002 0.006 0.001 0.001 0.001 0.001 0.526 0.001 0.001 0.003 0.463 58 E 0.008 0.013 0.001 0.001 0.001 0.001 0.914 0.001 0.001 0.011 0.052 59 F 0.058 0.844 0.001 0.003 0.001 0.001 0.037 0.003 0.001 0.003 0.049 60 K 0.011 0.973 0.001 0.001 0.001 0.001 0.005 0.001 0.001 0.001 0.010 61 Y 0.007 0.970 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.020 62 F 0.012 0.981 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.005 63 K 0.009 0.979 0.001 0.001 0.001 0.001 0.001 0.007 0.001 0.001 0.003 64 R 0.014 0.957 0.002 0.001 0.001 0.001 0.001 0.009 0.001 0.001 0.018 65 Q 0.022 0.947 0.001 0.001 0.001 0.001 0.001 0.010 0.001 0.001 0.020 66 F 0.022 0.956 0.002 0.001 0.001 0.001 0.001 0.005 0.001 0.001 0.015 67 G 0.011 0.925 0.007 0.001 0.001 0.001 0.002 0.008 0.001 0.001 0.044 68 F 0.038 0.875 0.005 0.001 0.001 0.002 0.006 0.010 0.001 0.001 0.062 69 Y 0.105 0.790 0.007 0.001 0.002 0.002 0.006 0.007 0.001 0.001 0.079 70 Y 0.026 0.865 0.008 0.005 0.005 0.005 0.009 0.007 0.001 0.001 0.071 71 G 0.027 0.774 0.008 0.007 0.010 0.014 0.018 0.015 0.001 0.002 0.124 72 E 0.113 0.607 0.008 0.008 0.014 0.030 0.050 0.041 0.001 0.006 0.121 73 N 0.275 0.432 0.020 0.011 0.015 0.014 0.026 0.066 0.001 0.005 0.136 74 L 0.198 0.332 0.141 0.022 0.021 0.021 0.029 0.019 0.001 0.007 0.210 75 C 0.042 0.159 0.054 0.052 0.073 0.094 0.088 0.017 0.001 0.004 0.417 76 N 0.076 0.067 0.014 0.076 0.066 0.099 0.056 0.014 0.001 0.005 0.527 77 I 0.099 0.074 0.022 0.089 0.059 0.104 0.092 0.007 0.001 0.008 0.445 78 S 0.059 0.034 0.007 0.063 0.073 0.099 0.207 0.005 0.001 0.008 0.446 79 R 0.036 0.019 0.008 0.037 0.025 0.035 0.081 0.001 0.001 0.006 0.752