# TARGET T0303 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0303.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 29.7784 # Pos AA E B G H S T C 10N 1S 5N 5N 5N 5N 5N 5N 5N 1 N 0.002 0.001 0.001 0.002 0.001 0.001 0.994 2 S 0.027 0.057 0.004 0.178 0.016 0.016 0.702 3 L 0.007 0.006 0.007 0.853 0.025 0.017 0.084 4 P 0.005 0.002 0.013 0.869 0.027 0.016 0.069 5 D 0.005 0.003 0.007 0.928 0.015 0.007 0.035 6 L 0.001 0.001 0.003 0.992 0.001 0.002 0.002 7 A 0.001 0.001 0.001 0.997 0.001 0.001 0.001 8 L 0.001 0.001 0.001 0.998 0.001 0.001 0.001 9 S 0.001 0.001 0.001 0.996 0.001 0.003 0.001 10 I 0.001 0.001 0.001 0.996 0.001 0.003 0.001 11 N 0.001 0.001 0.001 0.994 0.001 0.005 0.001 12 S 0.001 0.001 0.001 0.988 0.001 0.011 0.001 13 A 0.001 0.001 0.001 0.986 0.001 0.010 0.003 14 L 0.001 0.001 0.002 0.987 0.002 0.006 0.002 15 K 0.001 0.001 0.006 0.963 0.003 0.025 0.002 16 D 0.001 0.001 0.011 0.869 0.007 0.107 0.005 17 V 0.001 0.002 0.008 0.370 0.016 0.591 0.013 18 N 0.001 0.001 0.003 0.030 0.046 0.842 0.077 19 L 0.002 0.003 0.002 0.002 0.142 0.006 0.845 20 P 0.020 0.018 0.008 0.003 0.058 0.009 0.884 21 Q 0.030 0.033 0.012 0.008 0.081 0.022 0.815 22 A 0.032 0.033 0.008 0.013 0.110 0.014 0.791 23 S 0.020 0.018 0.006 0.024 0.059 0.008 0.866 24 E 0.001 0.001 0.038 0.934 0.003 0.018 0.006 25 N 0.001 0.001 0.028 0.950 0.002 0.016 0.003 26 L 0.003 0.001 0.042 0.931 0.002 0.013 0.009 27 V 0.009 0.002 0.017 0.944 0.003 0.013 0.011 28 M 0.022 0.001 0.017 0.926 0.008 0.017 0.008 29 T 0.022 0.001 0.016 0.912 0.005 0.039 0.005 30 W 0.025 0.002 0.019 0.860 0.014 0.057 0.023 31 I 0.055 0.023 0.018 0.673 0.067 0.088 0.076 32 G 0.029 0.009 0.021 0.350 0.191 0.200 0.201 33 N 0.006 0.003 0.016 0.371 0.143 0.423 0.038 34 G 0.003 0.002 0.013 0.738 0.053 0.159 0.032 35 A 0.003 0.002 0.007 0.898 0.019 0.012 0.059 36 D 0.004 0.001 0.005 0.915 0.032 0.014 0.029 37 V 0.006 0.001 0.003 0.971 0.005 0.010 0.005 38 L 0.011 0.001 0.003 0.973 0.001 0.004 0.006 39 S 0.007 0.001 0.003 0.979 0.002 0.004 0.005 40 Q 0.005 0.001 0.003 0.978 0.004 0.006 0.005 41 R 0.005 0.001 0.003 0.967 0.003 0.013 0.009 42 A 0.004 0.001 0.005 0.950 0.003 0.021 0.016 43 V 0.004 0.001 0.008 0.930 0.008 0.028 0.020 44 D 0.003 0.001 0.012 0.923 0.008 0.039 0.013 45 W 0.003 0.001 0.010 0.887 0.017 0.063 0.019 46 A 0.004 0.002 0.014 0.804 0.021 0.090 0.064 47 C 0.009 0.005 0.020 0.766 0.044 0.054 0.102 48 T 0.011 0.002 0.047 0.748 0.029 0.090 0.073 49 Q 0.012 0.002 0.059 0.707 0.039 0.130 0.050 50 A 0.013 0.007 0.058 0.517 0.041 0.275 0.090 51 E 0.021 0.009 0.093 0.181 0.120 0.310 0.267 52 K 0.047 0.007 0.072 0.148 0.276 0.136 0.314 53 E 0.052 0.025 0.044 0.111 0.119 0.126 0.524 54 L 0.022 0.040 0.005 0.027 0.120 0.012 0.774 55 T 0.003 0.006 0.001 0.014 0.017 0.004 0.954 56 E 0.001 0.001 0.048 0.904 0.004 0.037 0.006 57 D 0.001 0.001 0.051 0.909 0.002 0.034 0.003 58 E 0.001 0.001 0.065 0.915 0.001 0.016 0.003 59 F 0.001 0.001 0.004 0.991 0.001 0.003 0.001 60 K 0.001 0.001 0.002 0.990 0.001 0.007 0.001 61 Y 0.001 0.001 0.002 0.978 0.001 0.020 0.001 62 F 0.001 0.001 0.003 0.970 0.001 0.023 0.003 63 K 0.001 0.001 0.005 0.983 0.001 0.008 0.002 64 R 0.001 0.001 0.004 0.976 0.002 0.017 0.001 65 Q 0.001 0.001 0.003 0.970 0.001 0.024 0.002 66 F 0.001 0.001 0.002 0.981 0.001 0.013 0.003 67 G 0.001 0.001 0.003 0.980 0.002 0.011 0.004 68 F 0.001 0.001 0.002 0.985 0.002 0.009 0.002 69 Y 0.001 0.001 0.003 0.981 0.002 0.010 0.003 70 Y 0.001 0.001 0.006 0.961 0.003 0.021 0.006 71 G 0.003 0.001 0.011 0.914 0.008 0.052 0.011 72 E 0.004 0.001 0.014 0.855 0.017 0.087 0.022 73 N 0.007 0.002 0.014 0.805 0.023 0.099 0.049 74 L 0.012 0.005 0.028 0.771 0.027 0.082 0.076 75 C 0.031 0.003 0.078 0.621 0.057 0.090 0.121 76 N 0.049 0.004 0.074 0.606 0.058 0.111 0.098 77 I 0.054 0.010 0.064 0.496 0.082 0.141 0.153 78 S 0.061 0.021 0.028 0.239 0.055 0.106 0.490 79 R 0.039 0.006 0.017 0.082 0.062 0.054 0.740