# TARGET T0303 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0303.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 29.7784 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 N 0.020 0.059 0.130 0.071 0.027 0.353 0.047 0.002 0.289 0.002 0.001 2 S 0.428 0.038 0.096 0.374 0.016 0.015 0.013 0.012 0.003 0.003 0.002 3 L 0.709 0.033 0.095 0.022 0.010 0.024 0.031 0.002 0.072 0.002 0.001 4 P 0.974 0.001 0.013 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.002 5 D 0.939 0.001 0.006 0.020 0.001 0.015 0.009 0.006 0.003 0.001 0.001 6 L 0.985 0.001 0.001 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 7 A 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 8 L 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 9 S 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 10 I 0.995 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 11 N 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 12 S 0.994 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 A 0.994 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 L 0.988 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 15 K 0.983 0.002 0.002 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 16 D 0.915 0.003 0.003 0.074 0.001 0.002 0.001 0.001 0.001 0.001 0.001 17 V 0.290 0.011 0.019 0.674 0.001 0.002 0.001 0.001 0.002 0.001 0.001 18 N 0.013 0.001 0.004 0.041 0.001 0.016 0.882 0.033 0.008 0.001 0.001 19 L 0.027 0.304 0.474 0.005 0.012 0.029 0.017 0.001 0.131 0.001 0.001 20 P 0.063 0.004 0.896 0.002 0.001 0.026 0.001 0.001 0.001 0.001 0.008 21 Q 0.192 0.152 0.459 0.078 0.026 0.055 0.007 0.008 0.016 0.003 0.004 22 A 0.053 0.336 0.412 0.038 0.100 0.029 0.011 0.003 0.015 0.003 0.001 23 S 0.011 0.081 0.801 0.003 0.050 0.035 0.001 0.001 0.011 0.007 0.001 24 E 0.989 0.001 0.002 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 25 N 0.986 0.001 0.001 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 26 L 0.973 0.001 0.001 0.024 0.001 0.001 0.001 0.001 0.001 0.001 0.001 27 V 0.966 0.004 0.007 0.015 0.001 0.003 0.002 0.001 0.001 0.001 0.001 28 M 0.973 0.006 0.005 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 29 T 0.875 0.025 0.010 0.075 0.009 0.002 0.001 0.001 0.002 0.001 0.001 30 W 0.752 0.033 0.049 0.098 0.007 0.019 0.026 0.003 0.012 0.001 0.001 31 I 0.425 0.094 0.065 0.373 0.008 0.014 0.002 0.001 0.018 0.001 0.001 32 G 0.261 0.013 0.090 0.031 0.081 0.007 0.020 0.097 0.003 0.397 0.001 33 N 0.526 0.011 0.086 0.329 0.005 0.009 0.019 0.005 0.003 0.005 0.001 34 G 0.526 0.002 0.026 0.057 0.012 0.003 0.019 0.241 0.001 0.111 0.001 35 A 0.966 0.003 0.017 0.006 0.001 0.004 0.001 0.001 0.001 0.001 0.001 36 D 0.990 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 37 V 0.991 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 38 L 0.995 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 39 S 0.994 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 40 Q 0.994 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 41 R 0.983 0.001 0.001 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 42 A 0.982 0.001 0.002 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 43 V 0.925 0.004 0.005 0.062 0.001 0.002 0.001 0.001 0.001 0.001 0.001 44 D 0.891 0.008 0.017 0.068 0.002 0.005 0.005 0.002 0.002 0.001 0.001 45 W 0.778 0.022 0.032 0.130 0.007 0.007 0.012 0.007 0.005 0.002 0.001 46 A 0.754 0.021 0.045 0.109 0.008 0.018 0.026 0.008 0.007 0.004 0.001 47 C 0.678 0.052 0.077 0.106 0.016 0.034 0.014 0.004 0.014 0.004 0.001 48 T 0.719 0.049 0.070 0.110 0.011 0.018 0.011 0.003 0.006 0.002 0.001 49 Q 0.742 0.046 0.058 0.104 0.014 0.009 0.012 0.002 0.011 0.002 0.001 50 A 0.698 0.035 0.092 0.130 0.011 0.012 0.008 0.004 0.007 0.003 0.001 51 E 0.515 0.034 0.096 0.202 0.028 0.020 0.062 0.020 0.013 0.010 0.001 52 K 0.469 0.083 0.232 0.112 0.030 0.021 0.024 0.012 0.012 0.005 0.001 53 E 0.321 0.109 0.318 0.146 0.020 0.031 0.022 0.005 0.021 0.005 0.002 54 L 0.068 0.167 0.586 0.083 0.021 0.058 0.006 0.001 0.010 0.001 0.001 55 T 0.010 0.126 0.668 0.006 0.061 0.076 0.002 0.001 0.047 0.006 0.001 56 E 0.989 0.001 0.002 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 57 D 0.990 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 58 E 0.965 0.001 0.001 0.033 0.001 0.001 0.001 0.001 0.001 0.001 0.001 59 F 0.989 0.001 0.002 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 60 K 0.996 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 61 Y 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 62 F 0.988 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 63 K 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 64 R 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 65 Q 0.979 0.001 0.001 0.020 0.001 0.001 0.001 0.001 0.001 0.001 0.001 66 F 0.863 0.003 0.006 0.122 0.001 0.001 0.002 0.002 0.002 0.001 0.001 67 G 0.948 0.001 0.006 0.006 0.001 0.002 0.023 0.008 0.001 0.005 0.001 68 F 0.968 0.005 0.004 0.019 0.001 0.002 0.001 0.001 0.001 0.001 0.001 69 Y 0.908 0.006 0.006 0.073 0.001 0.003 0.001 0.001 0.001 0.001 0.001 70 Y 0.759 0.027 0.030 0.134 0.005 0.011 0.013 0.004 0.015 0.001 0.001 71 G 0.825 0.014 0.031 0.047 0.010 0.006 0.027 0.017 0.002 0.020 0.001 72 E 0.833 0.028 0.036 0.067 0.012 0.010 0.007 0.002 0.002 0.002 0.001 73 N 0.564 0.059 0.079 0.177 0.017 0.050 0.011 0.002 0.039 0.001 0.001 74 L 0.861 0.015 0.021 0.076 0.002 0.010 0.006 0.002 0.006 0.001 0.001 75 C 0.832 0.020 0.038 0.084 0.005 0.007 0.006 0.002 0.002 0.002 0.001 76 N 0.746 0.022 0.027 0.154 0.010 0.010 0.021 0.004 0.006 0.001 0.001 77 I 0.565 0.059 0.088 0.243 0.011 0.011 0.011 0.002 0.009 0.001 0.001 78 S 0.343 0.114 0.263 0.129 0.057 0.030 0.015 0.020 0.018 0.012 0.001 79 R 0.484 0.150 0.146 0.104 0.041 0.018 0.018 0.008 0.015 0.014 0.001