# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2ah5A 210 3.05e-04 1izmA 184 5.12e-01 a.199.1.1 90725 2fnaA 357 7.49e-01 1ku1A 230 1.00e+00 a.118.3.1 72996 2b49A 287 1.40e+00 2f1kA 279 1.72e+00 1ezwA 349 1.80e+00 1ezwA c.1.16.3 29558 1zkrA 153 1.85e+00 1hyp 80 2.01e+00 1hyp a.52.1.1 17806 1o08A 221 2.21e+00 c.108.1.6 86525 1e19A 314 2.79e+00 1b7bA c.73.1.1 34967 2a2fX 325 2.83e+00 1z83A 196 2.84e+00 1wuiL 534 2.87e+00 1ubkL 534 2.87e+00 e.18.1.1 88422 1pgtA 210 3.08e+00 1pgtA a.45.1.1,c.47.1.5 17515,32809 1lbkA 208 3.76e+00 a.45.1.1,c.47.1.5 73809,73810 1t3tA 1303 4.75e+00 a.5.10.1,c.23.16.1,d.284.1.2,d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 106381,106382,106383,106384,106385,106386,106387 1uc8A 280 5.59e+00 c.30.1.6,d.142.1.7 99165,99166 1k0dA 260 5.64e+00 a.45.1.1,c.47.1.5 67930,67931 1fc4A 401 6.01e+00 1bs0A c.67.1.4 59760 1t5oA 351 6.13e+00 c.124.1.5 106459 1ygtA 111 6.33e+00 1h97A 147 6.46e+00 1h97A a.1.1.2 60812 2f2eA 146 6.99e+00 1oaoA 674 7.04e+00 e.26.1.2 86744 1npyA 271 7.52e+00 c.2.1.7,c.58.1.5 85995,85996 1puoA 170 7.87e+00 a.101.1.1,a.101.1.1 95134,95135 1tx4A 198 8.08e+00 1tx4A a.116.1.1 19098 1pu6A 218 8.39e+00 a.96.1.5 95123 1php 394 9.03e+00 16pk c.86.1.1 35452 1b7yA 350 9.35e+00 1pysA d.104.1.1 40776 1p77A 272 9.37e+00 c.2.1.7,c.58.1.5 94214,94215 1fpzA 212 9.51e+00 1fpzA c.45.1.1 59976 1o06A 20 9.56e+00 j.105.1.1 86524 2cwcA 303 1.00e+01 2cbiA 594 1.02e+01 1owfB 94 1.03e+01 a.55.1.1 87488 1q1fA 151 1.05e+01 a.1.1.2 104476 2g0uA 92 1.12e+01 1nkzB 41 1.16e+01 f.3.1.1 80612 1ez3A 127 1.21e+01 1dn1B a.47.2.1 17768 1zwwA 256 1.22e+01 2grrB 170 1.23e+01 1qsaA 618 1.29e+01 1qsaA a.118.5.1,d.2.1.6 19182,36988 1ecmA 109 1.31e+01 1ecmA a.130.1.1 19492 2go7A 207 1.33e+01 1z9hA 290 1.36e+01 1cunA 213 1.41e+01 1cunA a.7.1.1,a.7.1.1 16313,16314 1nm8A 616 1.43e+01 c.43.1.3,c.43.1.3 85872,85873 1j09A 468 1.43e+01 a.97.1.1,c.26.1.1 77025,77026 2genA 197 1.51e+01 1sf8A 126 1.55e+01 d.271.1.1 105472 1tffA 234 1.55e+01 d.3.1.11 106854 2fbqA 235 1.55e+01 5pal 109 1.57e+01 1a75A a.39.1.4 17215 1n2zA 245 1.61e+01 c.92.2.2 79865 1a59 378 1.64e+01 1aj8A a.103.1.1 18902 2fdrA 229 1.66e+01 1brwA 433 1.66e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 2g7sA 194 1.78e+01 1orjA 130 1.78e+01 a.24.19.1 93456 1g4yB 101 1.81e+01 1g4yB f.15.1.1 60251 1rh6A 55 1.85e+01 a.6.1.7 104935 1t06A 235 1.86e+01 a.118.1.17 106194 1es5A 262 1.91e+01 1skf e.3.1.1 42679 2fmlA 273 1.94e+01 1eexA 554 1.96e+01 1dioA c.1.19.3 29650 2ftzA 284 1.97e+01 1kv4A 42 2.01e+01 j.4.1.3 73051 1ymtA 246 2.05e+01 1zccA 248 2.10e+01 1b0b 142 2.12e+01 2fal a.1.1.2 15010 1u4qA 322 2.18e+01 1ww8A 439 2.19e+01 1jr8A 117 2.23e+01 a.24.15.1 67115 2baa 243 2.24e+01 1cnsA d.2.1.1 36243 1cg5B 141 2.24e+01 1cg5B a.1.1.2 15585 1wa8B 95 2.29e+01 2aq4A 434 2.31e+01 1obdA 306 2.32e+01 d.143.1.1 86767 1v54A 514 2.35e+01 f.24.1.1 100321 1f1eA 154 2.38e+01 a.22.1.2 64927 1jnyA 435 2.39e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1nh2D 121 2.42e+01 a.32.1.1,b.56.1.1 91876,91877 1pbwA 216 2.42e+01 1pbwA a.116.1.1 19103 1bkrA 109 2.45e+01 1bkrA a.40.1.1 17394 1ldfA 281 2.49e+01 f.19.1.1 73845 1vekA 84 2.53e+01 1ug0A 88 2.56e+01 a.217.1.1 107822 1vflA 356 2.59e+01 1yviA 149 2.64e+01 1sz2A 332 2.69e+01 1fs1B 141 2.70e+01 1vcbB a.157.1.1,d.42.1.1 19252,38664 1wvvA 265 2.71e+01 2aebA 322 2.81e+01 1te2A 226 2.83e+01 c.108.1.6 106792 1v32A 101 2.84e+01 a.42.1.1 100277 1h5wA 309 2.84e+01 e.27.1.1 65635 1qq5A 253 2.86e+01 1qq5A c.108.1.1 43327 1yo3A 102 2.89e+01 1qloA 34 2.91e+01 1qloA j.35.1.1 46281 1iapA 211 3.00e+01 a.91.1.1 62119 1bed 181 3.04e+01 1fvkA c.47.1.13 90330 2ez3A 302 3.05e+01 1ta9A 450 3.06e+01 1jhdA 396 3.06e+01 b.122.1.3,c.26.1.5 66712,66713 1gcvB 136 3.08e+01 1cg5B a.1.1.2 15589 1wzzA 334 3.12e+01 1ppjB 439 3.12e+01 d.185.1.1,d.185.1.1 104254,104255 1p68A 102 3.14e+01 k.8.1.1 94158 1k1fA 72 3.15e+01 a.147.1.1 68007 2fuqA 747 3.20e+01 1n83A 270 3.21e+01 a.123.1.1 80276 1vi2A 300 3.27e+01 c.2.1.7,c.58.1.5 100726,100727 2fnoA 248 3.29e+01 1vp8A 201 3.34e+01 1qwkA 317 3.38e+01 c.1.7.1 96482 1r1hA 696 3.40e+01 d.92.1.4 104756 1zbpA 273 3.40e+01 1dxjA 242 3.41e+01 1cnsA d.2.1.1 36244 1k4nA 192 3.51e+01 d.32.1.5 72059 1i40A 175 3.52e+01 b.40.5.1 66024 2tct 207 3.54e+01 2tct a.4.1.9,a.121.1.1 16063,19240 1bhdA 118 3.60e+01 1bkrA a.40.1.1 17398 1twfC 318 3.61e+01 1uhnA 189 3.62e+01 a.39.1.5 99399 1dw0A 112 3.63e+01 1dw0A a.3.1.1 15911 1rl4A 188 3.64e+01 d.167.1.1 97636 1z6oA 212 3.68e+01 1r8mE 203 3.70e+01 a.118.3.1 97242 1odfA 290 3.73e+01 c.37.1.6 92782 2gtsA 86 3.82e+01 1lc5A 364 3.83e+01 c.67.1.1 73827 1r8sE 203 3.87e+01 a.118.3.1 97248 1agjA 242 3.88e+01 1agjA b.47.1.1 25827 1sjdA 368 3.89e+01 c.1.11.2,d.54.1.1 105632,105633 1v7bA 185 3.90e+01 1uu1A 335 3.91e+01 c.67.1.1 99993 2axtJ 40 3.92e+01 1qf9A 194 3.94e+01 1zin c.37.1.1 31848 2b6cA 220 4.01e+01 1dqaA 467 4.03e+01 1dqaA d.58.20.1,d.179.1.1 39364,42585 1pmi 440 4.06e+01 1pmi b.82.1.3 28114 1vhqA 232 4.12e+01 c.23.16.2 100696 1m6sA 347 4.14e+01 c.67.1.1 78701 2cr9A 139 4.16e+01 1ofcX 304 4.16e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1cfr 285 4.23e+01 1cfr c.52.1.7 33312 1u9lA 70 4.27e+01 a.60.4.2 107751 1elrA 131 4.34e+01 1a17 a.118.8.1 19209 1vb3A 428 4.34e+01 1rh5A 436 4.38e+01 f.41.1.1 97464 1adt 356 4.38e+01 1anv a.54.1.1,g.51.1.1,g.51.1.1 17887,45362,45368 1dtjA 76 4.39e+01 1dt4A d.51.1.1 38800 1yfsA 465 4.49e+01 1t1jA 125 4.53e+01 c.137.1.1 106249 1b4pA 217 4.63e+01 a.45.1.1,c.47.1.5 83158,83159 2afbA 351 4.63e+01 1rgxA 114 4.67e+01 g.77.1.1 104932 1e3dB 542 4.71e+01 1h2rL e.18.1.1 59189 1zj8A 566 4.75e+01 1xszA 356 4.80e+01 1nytA 271 4.80e+01 c.2.1.7,c.58.1.5 86417,86418 1sz9A 144 4.80e+01 a.118.9.4 106139 1r5lA 262 4.85e+01 a.5.3.1,c.13.1.1 97099,97100 2a07F 93 4.85e+01 1dk0A 188 4.89e+01 1b2vA d.35.1.1 38530 1aquA 297 4.91e+01 1aquA c.37.1.5 31942 1mtyG 162 4.92e+01 1mtyG a.23.3.1 16498 1q0vA 81 5.00e+01 j.105.1.1 95514 1yovA 537 5.01e+01 2gk3A 256 5.01e+01 1ng6A 148 5.01e+01 a.182.1.1 85670 2aexA 346 5.05e+01 1ywfA 296 5.10e+01 2f6mB 109 5.10e+01 1pvaA 110 5.20e+01 1a75A a.39.1.4 17207 1wkuA 254 5.21e+01 1h5rA 293 5.24e+01 c.68.1.6 65623 1wbeA 209 5.29e+01 1skvA 69 5.30e+01 a.30.5.1 105690 1z5zA 271 5.31e+01 1roaA 122 5.34e+01 d.17.1.2 105024 1s8nA 205 5.34e+01 c.23.1.1 105374 1sa3A 262 5.34e+01 c.52.1.23 105400 1wy9A 147 5.43e+01 1egpA 45 5.44e+01 1egpA d.40.1.1 38561 1z8uA 102 5.55e+01 1cpo 299 5.58e+01 1cpo a.39.3.1,a.39.3.1 17390,17391 1n9lA 109 5.58e+01 d.110.3.6 85468 1oj5A 132 5.62e+01 d.110.3.8 93087 2f4mA 295 5.64e+01 1q77A 138 5.64e+01 c.26.2.4 96023 2a1hA 365 5.74e+01 1qgtA 149 5.76e+01 1qgtA a.62.1.1 18135 1y14A 187 5.77e+01 1o5hA 214 5.78e+01 a.191.1.1 92497 1n7oA 721 5.82e+01 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1u5pA 216 5.83e+01 1zrn 232 5.83e+01 1qq5A c.108.1.1 43323 1unlD 208 5.84e+01 1ybzA 91 5.86e+01 1g2cA 52 5.93e+01 1g2cA h.3.2.1 45767 1xnfA 275 5.95e+01 1jsdB 176 5.96e+01 h.3.1.1 63259 1oz9A 150 6.10e+01 d.92.1.15 93808 1cseI 71 6.11e+01 1egpA d.40.1.1 38559 1c17M 177 6.14e+01 1c17M f.18.1.1 43648 1uw4B 248 6.16e+01 a.118.1.14 100072 1rypF 233 6.18e+01 1rypF d.153.1.4 41937 1n7lA 53 6.24e+01 j.37.1.1 91698 1cr5A 189 6.27e+01 1cr5A b.52.2.3,d.31.1.1 26931,38465 1lfkA 398 6.34e+01 a.104.1.1 77926 1xnzA 264 6.44e+01 1nq7A 244 6.54e+01 a.123.1.1 92047 2f4qA 346 6.57e+01 1ae7 119 6.59e+01 1poa a.133.1.2 19553 2d5cA 263 6.60e+01 1r0dA 206 6.60e+01 a.216.1.1 104715 1ls9A 91 6.63e+01 a.3.1.1 78177 1v8bA 479 6.70e+01 1vp4A 425 6.70e+01 1iicA 422 6.72e+01 1nmtA d.108.1.2,d.108.1.2 62422,62423 1tedA 393 6.73e+01 c.95.1.2 106807 1o26A 232 6.88e+01 d.207.1.1 86566 3vub 101 6.99e+01 3vub b.34.6.1 24613 2be4A 272 7.00e+01 1w33A 181 7.13e+01 1kn1B 161 7.13e+01 a.1.1.3 77456 1pieA 419 7.19e+01 d.14.1.5,d.58.26.7 94706,94707 1swvA 267 7.20e+01 2evaA 307 7.23e+01 1x46A 150 7.25e+01 1n62A 166 7.26e+01 a.56.1.1,d.15.4.2 80090,80091 2gx9A 129 7.31e+01 2btzA 394 7.32e+01 1jfiA 98 7.40e+01 1jfiA a.22.1.3 62936 1wqgA 185 7.46e+01 1rwhA 757 7.46e+01 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 1wrdA 103 7.50e+01 1x13A 401 7.54e+01 1l1eA 287 7.55e+01 c.66.1.18 73454 1kblA 873 7.59e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1y97A 238 7.63e+01 1hqsA 423 7.68e+01 1iso c.77.1.1 61154 2glzA 153 7.72e+01 1n7sD 66 7.77e+01 h.1.15.1 80274 1rwyA 109 7.79e+01 a.39.1.4 98002 1vhnA 318 7.83e+01 c.1.4.1 100693 1xezA 721 7.89e+01 1zdnA 158 7.90e+01 1qusA 322 7.92e+01 1ltm d.2.1.6 36991 1gl2A 65 7.96e+01 h.1.15.1 65278 1sfkA 76 8.02e+01 a.190.1.1 105488 1x79A 98 8.03e+01 1jhgA 101 8.06e+01 1jhgA a.4.12.1 19009 1a32 88 8.08e+01 1a32 a.16.1.2 16384 2bidA 197 8.24e+01 2bidA f.1.4.1 43398 1mw7A 240 8.32e+01 e.39.1.1 79557 2cqnA 77 8.34e+01 2amxA 376 8.35e+01 1d3vA 323 8.35e+01 1d3vA c.42.1.1 32559 2cxxA 190 8.38e+01 1qf5A 431 8.40e+01 1adeA c.37.1.10 32212 1uedA 406 8.45e+01 a.104.1.1 99256 1owfA 99 8.52e+01 a.55.1.1 87487 1jekA 42 8.66e+01 1jekA h.3.2.1 62920 1othA 321 8.67e+01 1othA c.78.1.1,c.78.1.1 35260,35261 1irqA 71 8.74e+01 a.43.1.4 66297 1iwmA 186 8.74e+01 b.125.1.2 83758 2aqlA 173 8.76e+01 1i7dA 659 8.78e+01 1d6mA e.10.1.1 61886 1vhtA 218 8.82e+01 c.37.1.1 100700 1cf7B 95 8.83e+01 1cf7B a.4.5.17 16152 2a10A 125 8.86e+01 1l9lA 74 8.86e+01 a.64.1.1 77827 1chuA 540 8.87e+01 1chuA a.7.3.1,c.3.1.4,d.168.1.1 16325,30424,42307 1x0lA 333 8.88e+01 1jfxA 217 8.91e+01 c.1.8.8 62943