# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2ah5A 210 3.82e-04 2f2eA 146 3.63e-01 1o08A 221 4.26e-01 c.108.1.6 86525 1te2A 226 7.74e-01 c.108.1.6 106792 1xdwA 331 9.36e-01 2fnaA 357 9.90e-01 1qq5A 253 1.18e+00 1qq5A c.108.1.1 43327 1vf1A 229 1.39e+00 1j5uA 136 1.57e+00 d.208.1.1 71584 1hyp 80 2.33e+00 1hyp a.52.1.1 17806 1vheA 373 2.66e+00 b.49.3.1,c.56.5.4 100669,100670 1tf5A 844 3.82e+00 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1sf8A 126 3.89e+00 d.271.1.1 105472 1h97A 147 4.72e+00 1h97A a.1.1.2 60812 1cunA 213 4.72e+00 1cunA a.7.1.1,a.7.1.1 16313,16314 1b7yA 350 4.95e+00 1pysA d.104.1.1 40776 1ym3A 215 5.24e+00 1ihoA 283 5.78e+00 1ihoA c.26.1.4 62390 2gtqA 867 6.02e+00 1n2zA 245 6.14e+00 c.92.2.2 79865 1wwzA 159 6.29e+00 2b8eA 273 7.04e+00 1zkrA 153 7.55e+00 2fokA 579 7.87e+00 2fokA a.4.5.12,a.4.5.12,a.4.5.12,c.52.1.12 16131,16132,16133,33323 1u5pA 216 8.55e+00 1jnyA 435 9.92e+00 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1roaA 122 9.96e+00 d.17.1.2 105024 2fg9A 178 1.07e+01 1r3eA 309 1.12e+01 b.122.1.1,d.265.1.2 96907,96908 1bhdA 118 1.15e+01 1bkrA a.40.1.1 17398 1j57A 143 1.24e+01 d.221.1.1 77079 1kbvA 327 1.28e+01 b.6.1.3,b.6.1.3 68395,68396 1tc5A 194 1.37e+01 c.110.1.1 106752 2fnoA 248 1.48e+01 1tw7A 99 1.49e+01 1go3E 187 1.56e+01 b.40.4.5,d.230.1.1 83054,83055 1r6wA 322 1.57e+01 c.1.11.2,d.54.1.1 97165,97166 1o0xA 262 1.58e+01 d.127.1.1 80755 1s29A 92 1.59e+01 a.4.5.46 98373 1pgtA 210 1.62e+01 1pgtA a.45.1.1,c.47.1.5 17515,32809 1vhqA 232 1.66e+01 c.23.16.2 100696 2cwcA 303 1.67e+01 1odfA 290 1.68e+01 c.37.1.6 92782 1cpcB 172 1.72e+01 1qgwC a.1.1.3 15644 1gzsB 165 1.91e+01 a.168.1.1 76425 1pvmA 184 1.92e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1lbkA 208 1.96e+01 a.45.1.1,c.47.1.5 73809,73810 1zq6A 359 2.04e+01 1hbnB 442 2.05e+01 1mroB a.89.1.1,d.58.31.2 60900,60901 1goiA 499 2.06e+01 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 1ecrA 309 2.09e+01 1ecrA e.2.1.1 42678 1u4qA 322 2.20e+01 1qf9A 194 2.21e+01 1zin c.37.1.1 31848 1yiiA 320 2.22e+01 1mw7A 240 2.25e+01 e.39.1.1 79557 1nh0A 99 2.25e+01 b.50.1.1 91869 1puoA 170 2.31e+01 a.101.1.1,a.101.1.1 95134,95135 1i58A 189 2.34e+01 1b3qA d.122.1.3 61773 1e6yB 433 2.37e+01 1mroB a.89.1.1,d.58.31.2 18535,39453 1ezwA 349 2.38e+01 1ezwA c.1.16.3 29558 1aquA 297 2.38e+01 1aquA c.37.1.5 31942 1mtzA 293 2.39e+01 c.69.1.7 79467 1gcvB 136 2.42e+01 1cg5B a.1.1.2 15589 1zrn 232 2.44e+01 1qq5A c.108.1.1 43323 1r0dA 206 2.46e+01 a.216.1.1 104715 1n82A 331 2.52e+01 c.1.8.3 91703 1pufB 73 2.60e+01 a.4.1.1 95132 1yh1A 359 2.69e+01 1wjgA 137 2.72e+01 2ganA 190 2.73e+01 1cnzA 363 2.79e+01 1cnzA c.77.1.1 35061 1rh6A 55 2.86e+01 a.6.1.7 104935 2fywA 267 3.09e+01 1mwmA 320 3.09e+01 c.55.1.1,c.55.1.1 79580,79581 1po5A 476 3.23e+01 a.104.1.1 94963 1jkeA 145 3.27e+01 c.110.1.1 66791 1p1mA 406 3.35e+01 b.92.1.4,c.1.9.9 87696,87697 2ar0A 541 3.38e+01 1rh5A 436 3.38e+01 f.41.1.1 97464 1a59 378 3.40e+01 1aj8A a.103.1.1 18902 1tjyA 316 3.42e+01 c.93.1.1 107062 1iicA 422 3.52e+01 1nmtA d.108.1.2,d.108.1.2 62422,62423 1odkA 235 3.54e+01 c.56.2.1 86863 1wywA 230 3.65e+01 1w9gA 104 3.77e+01 1vkpA 383 3.78e+01 d.126.1.6 108686 2g7lA 243 3.89e+01 1fs1B 141 3.92e+01 1vcbB a.157.1.1,d.42.1.1 19252,38664 2czdA 208 3.97e+01 1umgA 362 4.04e+01 d.280.1.1 107956 2fwkA 121 4.09e+01 2b1eA 564 4.14e+01 1iwmA 186 4.18e+01 b.125.1.2 83758 1yb5A 351 4.19e+01 1v4vA 376 4.22e+01 c.87.1.3 100313 1egpA 45 4.26e+01 1egpA d.40.1.1 38561 1obdA 306 4.30e+01 d.143.1.1 86767 1jogA 146 4.31e+01 a.24.16.2 77142 1xqwA 293 4.35e+01 1t8tA 271 4.35e+01 c.37.1.5 106685 2go7A 207 4.37e+01 1qcsA 211 4.44e+01 1qcsA b.52.2.3,d.31.1.1 26927,38461 2f7tA 227 4.47e+01 1sw5B 275 4.48e+01 c.94.1.1 106070 1qd9A 124 4.56e+01 1qu9A d.79.1.1 39758 1z3eA 132 4.68e+01 1hqsA 423 4.68e+01 1iso c.77.1.1 61154 1wy0A 342 4.75e+01 1hx0A 496 4.80e+01 b.71.1.1,c.1.8.1 61346,61347 1q77A 138 4.84e+01 c.26.2.4 96023 1oz9A 150 4.89e+01 d.92.1.15 93808 2bmjA 178 4.90e+01 1jmkC 230 4.92e+01 c.69.1.22 71747 1z7aA 308 5.07e+01 2amhA 207 5.09e+01 1oc2A 348 5.09e+01 c.2.1.2 92765 1lo7A 141 5.16e+01 d.38.1.1 74144 1uf2A 1019 5.21e+01 e.28.1.2 99289 1ml4A 308 5.22e+01 c.78.1.1,c.78.1.1 79255,79256 1n62A 166 5.24e+01 a.56.1.1,d.15.4.2 80090,80091 1n9lA 109 5.25e+01 d.110.3.6 85468 1o59A 355 5.30e+01 b.18.1.22,b.18.1.22 92495,92496 2b49A 287 5.32e+01 1n7zA 334 5.34e+01 b.127.1.1 85380 1qf5A 431 5.36e+01 1adeA c.37.1.10 32212 1yw0A 276 5.44e+01 1q3iA 214 5.47e+01 d.220.1.1 104524 1swvA 267 5.47e+01 1vhnA 318 5.50e+01 c.1.4.1 100693 1vl7A 157 5.52e+01 b.45.1.1 108732 2c8mA 262 5.57e+01 2ez6A 221 5.60e+01 1wpbA 172 5.67e+01 1uj8A 77 5.73e+01 1xkpA 246 6.00e+01 2chnA 716 6.01e+01 1xgkA 352 6.03e+01 2bl0B 145 6.05e+01 2gtsA 86 6.05e+01 1gefA 123 6.07e+01 1gefA c.52.1.18 60465 1cewI 108 6.08e+01 1cewI d.17.1.2 37999 1uu1A 335 6.16e+01 c.67.1.1 99993 1o22A 170 6.18e+01 d.238.1.1 86557 2cr9A 139 6.22e+01 1oshA 232 6.25e+01 a.123.1.1 93496 1g2qA 187 6.27e+01 c.61.1.1 65117 1aa7A 158 6.36e+01 1aa7A a.95.1.1 18741 1vqoX 92 6.36e+01 2d1eA 248 6.36e+01 1rm6C 161 6.44e+01 2fv7A 331 6.48e+01 1gegA 256 6.59e+01 1ybvA c.2.1.2 29888 256bA 106 6.63e+01 256bA a.24.3.1 16539 1g61A 228 6.76e+01 1g61A d.126.1.1 41126 1eerA 166 6.78e+01 1eerA a.26.1.2 16846 1ku1A 230 6.79e+01 a.118.3.1 72996 2ch4A 320 6.84e+01 1sw5A 275 6.86e+01 c.94.1.1 106069 1gqnA 252 6.87e+01 c.1.10.1 90514 1q1vA 70 6.91e+01 a.159.4.1 104479 2c5uA 375 6.96e+01 1cr1A 296 6.96e+01 1cr1A c.37.1.11 32286 1qazA 351 6.97e+01 1qazA a.102.3.1 18848 1kv4A 42 6.97e+01 j.4.1.3 73051 1oheA 348 7.04e+01 c.45.1.1,c.45.1.1 87013,87014 1t0tV 248 7.09e+01 d.58.4.10 106229 1nq6A 302 7.16e+01 c.1.8.3 92046 2g84A 197 7.37e+01 1kgnA 329 7.38e+01 a.25.1.2 68584 1orjA 130 7.40e+01 a.24.19.1 93456 1sb8A 352 7.45e+01 c.2.1.2 105410 1xneA 113 7.54e+01 1jb0L 154 7.66e+01 1jb0L f.31.1.1 62829 1khxA 227 7.66e+01 b.26.1.1 68631 1xeuA 263 7.74e+01 2ew8A 249 7.75e+01 1d4aA 273 7.80e+01 1d4aA c.23.5.3 31219 1othA 321 7.81e+01 1othA c.78.1.1,c.78.1.1 35260,35261 1ut9A 609 7.82e+01 a.102.1.2,b.1.18.2 99912,99913 2gk3A 256 7.86e+01 1zymA 258 7.92e+01 1zymA a.60.10.1,c.8.1.2 18110,30705 1fkmA 396 7.98e+01 1fkmA a.69.2.1,a.69.2.1 18315,18316 1r71A 178 8.03e+01 a.4.14.1 104823 1wvvA 265 8.06e+01 1j2zA 270 8.19e+01 b.81.1.1 90805 1izmA 184 8.29e+01 a.199.1.1 90725 1x13A 401 8.32e+01 1qhxA 178 8.33e+01 1qhsA c.37.1.3 31936 4cpv 109 8.43e+01 1a75A a.39.1.4 17198 1fm0D 81 8.50e+01 1fmaD d.15.3.1 37642 1xknA 355 8.54e+01 1ykdA 398 8.54e+01 1xt5A 135 8.78e+01 1nffA 260 8.92e+01 c.2.1.2 80457 1bkrA 109 8.96e+01 1bkrA a.40.1.1 17394 1e2wA 251 8.98e+01 1hcz b.2.6.1,b.84.2.2 22466,28252