# TARGET T0303 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0303.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 29.889 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 N 0.003 0.005 0.003 0.048 0.073 0.868 2 S 0.006 0.011 0.003 0.223 0.052 0.705 3 L 0.007 0.012 0.003 0.371 0.046 0.561 4 P 0.003 0.005 0.004 0.893 0.018 0.077 5 D 0.003 0.001 0.006 0.968 0.008 0.014 6 L 0.001 0.001 0.004 0.992 0.002 0.002 7 A 0.001 0.001 0.002 0.993 0.003 0.001 8 L 0.001 0.001 0.003 0.991 0.004 0.001 9 S 0.001 0.001 0.003 0.995 0.001 0.001 10 I 0.001 0.001 0.003 0.994 0.001 0.001 11 N 0.001 0.001 0.002 0.995 0.001 0.001 12 S 0.001 0.001 0.002 0.996 0.001 0.001 13 A 0.001 0.001 0.001 0.995 0.001 0.002 14 L 0.001 0.001 0.003 0.992 0.003 0.002 15 K 0.001 0.001 0.006 0.983 0.005 0.005 16 D 0.001 0.001 0.008 0.970 0.012 0.009 17 V 0.001 0.001 0.010 0.924 0.023 0.042 18 N 0.001 0.001 0.004 0.065 0.076 0.853 19 L 0.001 0.006 0.004 0.003 0.194 0.791 20 P 0.005 0.005 0.014 0.004 0.258 0.714 21 Q 0.015 0.016 0.061 0.010 0.381 0.517 22 A 0.018 0.025 0.018 0.014 0.322 0.602 23 S 0.016 0.011 0.009 0.032 0.091 0.841 24 E 0.001 0.001 0.027 0.962 0.006 0.005 25 N 0.001 0.001 0.017 0.971 0.008 0.002 26 L 0.003 0.001 0.014 0.973 0.008 0.002 27 V 0.010 0.001 0.006 0.970 0.008 0.005 28 M 0.008 0.001 0.006 0.971 0.009 0.005 29 T 0.015 0.001 0.006 0.959 0.012 0.008 30 W 0.028 0.002 0.006 0.929 0.015 0.020 31 I 0.031 0.006 0.006 0.869 0.033 0.055 32 G 0.045 0.009 0.010 0.533 0.172 0.231 33 N 0.010 0.003 0.003 0.643 0.084 0.256 34 G 0.003 0.002 0.003 0.767 0.037 0.189 35 A 0.001 0.001 0.001 0.989 0.004 0.005 36 D 0.001 0.001 0.002 0.989 0.004 0.004 37 V 0.004 0.001 0.002 0.986 0.004 0.003 38 L 0.006 0.001 0.005 0.980 0.006 0.003 39 S 0.004 0.001 0.006 0.984 0.005 0.002 40 Q 0.003 0.001 0.007 0.980 0.007 0.002 41 R 0.003 0.001 0.007 0.978 0.008 0.004 42 A 0.003 0.001 0.008 0.959 0.012 0.016 43 V 0.007 0.004 0.018 0.854 0.035 0.083 44 D 0.008 0.003 0.026 0.746 0.071 0.146 45 W 0.006 0.002 0.050 0.735 0.092 0.114 46 A 0.007 0.003 0.045 0.736 0.111 0.098 47 C 0.018 0.007 0.068 0.512 0.203 0.192 48 T 0.041 0.012 0.068 0.382 0.209 0.289 49 Q 0.062 0.013 0.074 0.361 0.244 0.246 50 A 0.028 0.007 0.064 0.495 0.220 0.186 51 E 0.037 0.010 0.078 0.294 0.299 0.281 52 K 0.067 0.014 0.068 0.220 0.305 0.326 53 E 0.074 0.020 0.049 0.140 0.236 0.481 54 L 0.036 0.025 0.009 0.067 0.177 0.686 55 T 0.013 0.007 0.001 0.029 0.064 0.887 56 E 0.001 0.001 0.011 0.978 0.005 0.005 57 D 0.001 0.001 0.013 0.982 0.003 0.001 58 E 0.001 0.001 0.011 0.984 0.004 0.001 59 F 0.001 0.001 0.003 0.990 0.003 0.004 60 K 0.001 0.001 0.002 0.993 0.002 0.002 61 Y 0.001 0.001 0.002 0.993 0.002 0.002 62 F 0.001 0.001 0.002 0.990 0.003 0.003 63 K 0.001 0.001 0.005 0.985 0.005 0.004 64 R 0.001 0.001 0.006 0.982 0.007 0.004 65 Q 0.001 0.001 0.004 0.976 0.006 0.014 66 F 0.001 0.001 0.004 0.982 0.004 0.009 67 G 0.001 0.001 0.015 0.951 0.016 0.017 68 F 0.002 0.001 0.021 0.944 0.021 0.011 69 Y 0.003 0.001 0.012 0.956 0.016 0.012 70 Y 0.002 0.001 0.011 0.938 0.021 0.027 71 G 0.002 0.001 0.041 0.875 0.043 0.037 72 E 0.005 0.001 0.097 0.735 0.103 0.058 73 N 0.020 0.006 0.158 0.493 0.190 0.133 74 L 0.021 0.008 0.169 0.515 0.178 0.110 75 C 0.036 0.003 0.205 0.416 0.206 0.133 76 N 0.058 0.007 0.127 0.347 0.204 0.257 77 I 0.065 0.021 0.034 0.242 0.144 0.494 78 S 0.038 0.019 0.004 0.092 0.091 0.756 79 R 0.014 0.003 0.002 0.045 0.057 0.880