# TARGET T0303 # Using neural net dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-n_notor2-from-empty.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 n_notor2 ) # The input amino acid frequencies were determined from # alignment T0303.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 29.889 # Pos AA G H I P A B S F J M N 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 N 0.058 0.015 0.005 0.027 0.013 0.032 0.063 0.002 0.001 0.003 0.783 2 S 0.072 0.006 0.004 0.011 0.006 0.008 0.078 0.002 0.001 0.003 0.810 3 L 0.186 0.008 0.012 0.017 0.003 0.010 0.137 0.001 0.001 0.007 0.619 4 P 0.004 0.002 0.001 0.003 0.001 0.001 0.025 0.001 0.001 0.001 0.964 5 D 0.013 0.008 0.001 0.004 0.001 0.002 0.194 0.001 0.001 0.001 0.777 6 L 0.074 0.149 0.001 0.004 0.001 0.003 0.170 0.001 0.001 0.005 0.593 7 A 0.016 0.750 0.001 0.003 0.001 0.003 0.092 0.002 0.001 0.002 0.131 8 L 0.015 0.844 0.001 0.001 0.001 0.001 0.048 0.002 0.001 0.001 0.089 9 S 0.016 0.969 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.001 0.012 10 I 0.002 0.994 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 11 N 0.001 0.993 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.003 12 S 0.003 0.988 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.007 13 A 0.006 0.984 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.005 14 L 0.010 0.974 0.003 0.001 0.001 0.001 0.001 0.008 0.001 0.001 0.004 15 K 0.005 0.986 0.002 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.003 16 D 0.035 0.928 0.001 0.001 0.001 0.001 0.001 0.018 0.001 0.001 0.019 17 V 0.145 0.704 0.003 0.001 0.001 0.001 0.001 0.120 0.001 0.001 0.027 18 N 0.371 0.211 0.046 0.001 0.001 0.001 0.004 0.293 0.001 0.002 0.070 19 L 0.027 0.017 0.824 0.003 0.001 0.002 0.006 0.005 0.001 0.001 0.115 20 P 0.001 0.001 0.002 0.005 0.001 0.001 0.004 0.001 0.001 0.001 0.986 21 Q 0.114 0.002 0.004 0.032 0.001 0.003 0.045 0.001 0.001 0.003 0.795 22 A 0.322 0.013 0.009 0.078 0.005 0.010 0.108 0.001 0.001 0.008 0.446 23 S 0.094 0.022 0.001 0.065 0.011 0.012 0.319 0.001 0.001 0.003 0.471 24 E 0.017 0.009 0.001 0.021 0.001 0.003 0.029 0.001 0.001 0.002 0.918 25 N 0.023 0.029 0.001 0.020 0.010 0.017 0.428 0.001 0.001 0.016 0.455 26 L 0.087 0.072 0.002 0.018 0.020 0.043 0.600 0.006 0.001 0.049 0.102 27 V 0.070 0.764 0.004 0.022 0.021 0.038 0.010 0.004 0.001 0.002 0.064 28 M 0.012 0.816 0.001 0.026 0.030 0.069 0.005 0.004 0.001 0.001 0.036 29 T 0.050 0.667 0.002 0.008 0.021 0.036 0.008 0.017 0.001 0.001 0.190 30 W 0.128 0.650 0.005 0.033 0.042 0.034 0.004 0.037 0.001 0.001 0.066 31 I 0.034 0.755 0.013 0.039 0.038 0.046 0.015 0.013 0.001 0.001 0.046 32 G 0.050 0.391 0.012 0.038 0.064 0.128 0.066 0.022 0.001 0.004 0.226 33 N 0.087 0.228 0.016 0.030 0.018 0.060 0.170 0.016 0.001 0.004 0.371 34 G 0.326 0.045 0.025 0.014 0.005 0.007 0.105 0.020 0.001 0.017 0.436 35 A 0.095 0.022 0.644 0.016 0.004 0.008 0.069 0.001 0.001 0.009 0.132 36 D 0.008 0.031 0.005 0.058 0.020 0.027 0.175 0.002 0.001 0.001 0.675 37 V 0.033 0.101 0.001 0.026 0.009 0.008 0.048 0.001 0.001 0.002 0.774 38 L 0.007 0.599 0.001 0.009 0.005 0.009 0.043 0.001 0.001 0.001 0.325 39 S 0.006 0.591 0.001 0.014 0.019 0.050 0.231 0.003 0.001 0.003 0.082 40 Q 0.019 0.909 0.001 0.007 0.003 0.010 0.009 0.003 0.001 0.001 0.040 41 R 0.007 0.976 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.014 42 A 0.009 0.957 0.001 0.001 0.001 0.001 0.001 0.007 0.001 0.001 0.024 43 V 0.031 0.946 0.002 0.001 0.001 0.001 0.001 0.007 0.001 0.001 0.013 44 D 0.030 0.896 0.020 0.001 0.001 0.001 0.002 0.011 0.001 0.001 0.041 45 W 0.058 0.890 0.005 0.001 0.001 0.001 0.001 0.011 0.001 0.001 0.032 46 A 0.105 0.665 0.017 0.001 0.002 0.002 0.008 0.030 0.001 0.001 0.169 47 C 0.061 0.634 0.046 0.008 0.009 0.010 0.035 0.029 0.001 0.003 0.167 48 T 0.101 0.501 0.024 0.017 0.009 0.016 0.040 0.037 0.001 0.003 0.253 49 Q 0.157 0.384 0.030 0.019 0.010 0.012 0.054 0.018 0.001 0.004 0.313 50 A 0.088 0.278 0.024 0.017 0.011 0.018 0.058 0.011 0.001 0.004 0.490 51 E 0.096 0.195 0.015 0.037 0.035 0.044 0.088 0.017 0.001 0.008 0.465 52 K 0.205 0.154 0.015 0.014 0.008 0.013 0.112 0.013 0.001 0.009 0.457 53 E 0.291 0.133 0.017 0.013 0.006 0.010 0.104 0.030 0.001 0.011 0.385 54 L 0.379 0.093 0.080 0.030 0.009 0.015 0.109 0.019 0.001 0.018 0.248 55 T 0.141 0.035 0.016 0.012 0.005 0.007 0.394 0.014 0.001 0.006 0.368 56 E 0.007 0.007 0.005 0.003 0.001 0.001 0.019 0.001 0.001 0.001 0.957 57 D 0.002 0.007 0.001 0.001 0.001 0.001 0.473 0.001 0.001 0.002 0.515 58 E 0.011 0.016 0.001 0.001 0.001 0.001 0.900 0.001 0.001 0.013 0.056 59 F 0.051 0.858 0.001 0.002 0.001 0.001 0.034 0.004 0.001 0.003 0.046 60 K 0.010 0.972 0.001 0.001 0.001 0.001 0.006 0.001 0.001 0.001 0.011 61 Y 0.008 0.970 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.020 62 F 0.011 0.982 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.004 63 K 0.008 0.981 0.001 0.001 0.001 0.001 0.001 0.006 0.001 0.001 0.003 64 R 0.013 0.959 0.002 0.001 0.001 0.001 0.001 0.009 0.001 0.001 0.017 65 Q 0.021 0.951 0.001 0.001 0.001 0.001 0.001 0.009 0.001 0.001 0.018 66 F 0.020 0.959 0.002 0.001 0.001 0.001 0.001 0.005 0.001 0.001 0.014 67 G 0.011 0.926 0.007 0.001 0.001 0.001 0.002 0.009 0.001 0.001 0.042 68 F 0.038 0.879 0.005 0.001 0.001 0.002 0.005 0.010 0.001 0.001 0.059 69 Y 0.101 0.793 0.007 0.001 0.002 0.002 0.007 0.007 0.001 0.001 0.079 70 Y 0.025 0.862 0.009 0.005 0.005 0.005 0.009 0.008 0.001 0.001 0.072 71 G 0.027 0.776 0.008 0.007 0.011 0.014 0.018 0.015 0.001 0.002 0.122 72 E 0.110 0.613 0.008 0.008 0.014 0.030 0.050 0.040 0.001 0.006 0.121 73 N 0.275 0.431 0.019 0.010 0.015 0.014 0.026 0.066 0.001 0.005 0.139 74 L 0.198 0.331 0.144 0.021 0.019 0.020 0.029 0.018 0.001 0.007 0.214 75 C 0.042 0.159 0.052 0.050 0.071 0.091 0.090 0.017 0.001 0.004 0.424 76 N 0.079 0.068 0.014 0.072 0.062 0.094 0.056 0.014 0.001 0.005 0.536 77 I 0.105 0.078 0.022 0.085 0.057 0.099 0.092 0.007 0.001 0.008 0.447 78 S 0.061 0.035 0.007 0.060 0.070 0.095 0.206 0.005 0.001 0.008 0.453 79 R 0.038 0.019 0.008 0.037 0.024 0.035 0.081 0.001 0.001 0.006 0.751