# TARGET T0303 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0303.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 29.889 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 N 0.090 0.091 0.174 0.140 0.041 0.210 0.077 0.004 0.168 0.004 0.001 2 S 0.545 0.029 0.073 0.265 0.014 0.026 0.017 0.016 0.005 0.008 0.002 3 L 0.758 0.035 0.072 0.037 0.010 0.014 0.012 0.004 0.043 0.015 0.001 4 P 0.948 0.001 0.033 0.009 0.001 0.003 0.001 0.001 0.001 0.001 0.004 5 D 0.958 0.001 0.005 0.016 0.001 0.009 0.005 0.003 0.002 0.001 0.001 6 L 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 7 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 8 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 9 S 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 10 I 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 11 N 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 12 S 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 A 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 L 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 15 K 0.996 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 16 D 0.958 0.001 0.001 0.039 0.001 0.001 0.001 0.001 0.001 0.001 0.001 17 V 0.239 0.002 0.008 0.749 0.001 0.001 0.001 0.001 0.001 0.001 0.001 18 N 0.005 0.001 0.001 0.022 0.001 0.006 0.917 0.045 0.002 0.001 0.001 19 L 0.008 0.320 0.532 0.004 0.009 0.027 0.007 0.001 0.091 0.001 0.001 20 P 0.028 0.003 0.944 0.001 0.001 0.016 0.001 0.001 0.001 0.001 0.006 21 Q 0.239 0.078 0.521 0.073 0.016 0.050 0.004 0.005 0.007 0.002 0.006 22 A 0.075 0.302 0.410 0.059 0.089 0.036 0.008 0.002 0.017 0.002 0.001 23 S 0.013 0.106 0.728 0.007 0.074 0.047 0.001 0.001 0.018 0.007 0.001 24 E 0.990 0.001 0.002 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 25 N 0.984 0.001 0.001 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 26 L 0.967 0.001 0.001 0.029 0.001 0.001 0.001 0.001 0.001 0.001 0.001 27 V 0.958 0.007 0.012 0.016 0.001 0.003 0.001 0.001 0.001 0.001 0.001 28 M 0.981 0.003 0.004 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 29 T 0.904 0.023 0.008 0.053 0.007 0.002 0.001 0.001 0.001 0.001 0.001 30 W 0.840 0.024 0.026 0.075 0.005 0.010 0.008 0.002 0.009 0.001 0.001 31 I 0.464 0.076 0.060 0.357 0.006 0.012 0.005 0.001 0.018 0.001 0.001 32 G 0.307 0.011 0.074 0.032 0.060 0.005 0.034 0.103 0.002 0.372 0.001 33 N 0.613 0.008 0.053 0.276 0.008 0.007 0.020 0.006 0.002 0.006 0.001 34 G 0.508 0.002 0.018 0.084 0.011 0.003 0.037 0.192 0.001 0.143 0.001 35 A 0.964 0.003 0.021 0.006 0.001 0.003 0.001 0.001 0.001 0.001 0.001 36 D 0.989 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 37 V 0.992 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 38 L 0.992 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 39 S 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 40 Q 0.996 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 41 R 0.989 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 42 A 0.984 0.001 0.001 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 43 V 0.938 0.006 0.007 0.046 0.001 0.001 0.001 0.001 0.001 0.001 0.001 44 D 0.836 0.010 0.021 0.111 0.004 0.005 0.009 0.002 0.002 0.001 0.001 45 W 0.536 0.043 0.068 0.294 0.014 0.010 0.013 0.005 0.015 0.002 0.001 46 A 0.438 0.055 0.130 0.138 0.035 0.022 0.115 0.038 0.010 0.019 0.001 47 C 0.402 0.082 0.136 0.162 0.055 0.039 0.064 0.024 0.019 0.015 0.001 48 T 0.508 0.097 0.166 0.129 0.036 0.031 0.012 0.005 0.012 0.004 0.001 49 Q 0.541 0.107 0.152 0.109 0.020 0.024 0.016 0.002 0.026 0.002 0.001 50 A 0.602 0.055 0.161 0.131 0.010 0.018 0.009 0.002 0.008 0.002 0.001 51 E 0.494 0.039 0.128 0.202 0.029 0.022 0.051 0.018 0.010 0.005 0.001 52 K 0.543 0.084 0.198 0.082 0.030 0.015 0.020 0.011 0.013 0.005 0.001 53 E 0.384 0.093 0.309 0.132 0.014 0.030 0.015 0.003 0.017 0.002 0.002 54 L 0.167 0.115 0.519 0.117 0.018 0.049 0.004 0.001 0.008 0.001 0.001 55 T 0.022 0.139 0.610 0.011 0.076 0.083 0.002 0.001 0.049 0.007 0.001 56 E 0.993 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 57 D 0.988 0.001 0.001 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 58 E 0.976 0.001 0.001 0.023 0.001 0.001 0.001 0.001 0.001 0.001 0.001 59 F 0.987 0.001 0.003 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 60 K 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 61 Y 0.995 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 62 F 0.984 0.001 0.001 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 63 K 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 64 R 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 65 Q 0.975 0.001 0.001 0.024 0.001 0.001 0.001 0.001 0.001 0.001 0.001 66 F 0.907 0.002 0.005 0.078 0.001 0.001 0.003 0.001 0.002 0.001 0.001 67 G 0.959 0.001 0.006 0.011 0.001 0.001 0.011 0.006 0.001 0.004 0.001 68 F 0.948 0.008 0.008 0.029 0.002 0.002 0.001 0.001 0.001 0.001 0.001 69 Y 0.890 0.012 0.012 0.076 0.003 0.003 0.001 0.001 0.002 0.001 0.001 70 Y 0.762 0.033 0.034 0.099 0.010 0.014 0.018 0.005 0.023 0.001 0.001 71 G 0.844 0.019 0.031 0.050 0.011 0.006 0.013 0.010 0.002 0.013 0.001 72 E 0.834 0.032 0.043 0.060 0.012 0.008 0.006 0.002 0.002 0.001 0.001 73 N 0.546 0.049 0.082 0.202 0.020 0.043 0.021 0.004 0.031 0.001 0.001 74 L 0.773 0.026 0.032 0.129 0.004 0.015 0.011 0.002 0.008 0.001 0.001 75 C 0.788 0.035 0.052 0.099 0.007 0.007 0.005 0.002 0.002 0.002 0.001 76 N 0.681 0.035 0.048 0.134 0.016 0.017 0.050 0.008 0.010 0.001 0.001 77 I 0.544 0.081 0.087 0.247 0.009 0.012 0.007 0.001 0.012 0.001 0.001 78 S 0.363 0.128 0.262 0.126 0.055 0.022 0.011 0.012 0.010 0.010 0.001 79 R 0.498 0.133 0.119 0.138 0.041 0.016 0.016 0.008 0.016 0.013 0.001