# List of top-scoring protein chains for T0303.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2ah5A 210 2.20e-01 2eyqA 1151 5.35e+00 2avyP 82 5.95e+00 1izmA 184 6.09e+00 a.199.1.1 90725 1vheA 373 9.58e+00 b.49.3.1,c.56.5.4 100669,100670 1kbvA 327 1.33e+01 b.6.1.3,b.6.1.3 68395,68396 2cwcA 303 1.35e+01 2gk3A 256 1.52e+01 2atrA 138 1.64e+01 2f2eA 146 1.96e+01 2ashA 381 2.17e+01 1y6dA 120 2.32e+01 2b3hA 329 2.48e+01 1nviD 81 2.54e+01 d.15.3.1 86241 1fm0D 81 2.54e+01 1fmaD d.15.3.1 37642 1v7rA 186 2.55e+01 c.51.4.1 100482 1j3nA 408 2.59e+01 c.95.1.1,c.95.1.1 84074,84075 1o0xA 262 2.75e+01 d.127.1.1 80755 1qs2A 401 2.93e+01 1qs1A d.166.1.1,d.166.1.1 42268,42269 1qs1A 462 3.13e+01 1qs1A d.166.1.1,d.166.1.1 42260,42261 2b5wA 357 3.20e+01 2b5vA 357 3.21e+01 1rypB 250 3.68e+01 1rypB d.153.1.4 41933 1jm7B 117 3.69e+01 g.44.1.1 66881 1tfr 305 4.03e+01 1tfr a.60.7.1,c.120.1.2 18081,33351 1miwA 404 4.11e+01 a.173.1.1,d.218.1.4 79162,79163 1omoA 322 4.16e+01 c.2.1.13 104017 1ek0A 170 4.18e+01 1ctqA c.37.1.8 32076 1vllA 334 4.27e+01 c.2.1.13 108834 1sly 618 4.36e+01 1qsaA a.118.5.1,d.2.1.6 19184,36990 2kinA 238 5.05e+01 1bg2 c.37.1.9 32190 1zxzA 197 5.10e+01 2alyA 266 5.11e+01 1s67L 119 5.13e+01 d.110.3.2 105303 1hyp 80 5.14e+01 1hyp a.52.1.1 17806 1j9aA 184 5.15e+01 c.55.3.5 84135 1x9nA 688 5.31e+01 1p22B 145 5.44e+01 a.157.1.1,d.42.1.1 87717,87718 2cufA 95 5.52e+01 1ldkD 133 5.81e+01 a.157.1.1,d.42.1.1 73855,73856 1b7yA 350 5.93e+01 1pysA d.104.1.1 40776 1fs1B 141 6.03e+01 1vcbB a.157.1.1,d.42.1.1 19252,38664 1qsaA 618 6.05e+01 1qsaA a.118.5.1,d.2.1.6 19182,36988 1othA 321 6.08e+01 1othA c.78.1.1,c.78.1.1 35260,35261 1x5cA 121 6.17e+01 2a6aA 218 6.17e+01 1fb5A 320 6.20e+01 c.78.1.1,c.78.1.1 90492,90493 1v9yA 167 6.32e+01 d.110.3.2 108454 1wfmA 138 6.36e+01 1mwvA 714 6.46e+01 a.93.1.3,a.93.1.3 85161,85162 1x7uA 748 6.49e+01 1t5yA 190 6.52e+01 b.122.1.1,d.17.6.3 106495,106496 1jecA 510 6.56e+01 b.122.1.3,c.26.1.5,c.37.1.15 66595,66596,66597 1sqwA 188 6.58e+01 1dtjA 76 6.62e+01 1dt4A d.51.1.1 38800 1j70A 514 6.62e+01 b.122.1.3,c.26.1.5,c.37.1.15 84118,84119,84120 2akhB 400 6.64e+01 1ezwA 349 6.70e+01 1ezwA c.1.16.3 29558 1oaoA 674 6.82e+01 e.26.1.2 86744 1xecA 329 6.86e+01 1xkuA 330 6.89e+01 2atpA 122 7.09e+01 2arjQ 123 7.10e+01 2astB 336 7.21e+01 1nezG 128 7.30e+01 b.1.1.1 85592 1fc0A 846 7.34e+01 1a8i c.87.1.4 35473 1l5sA 847 7.34e+01 c.87.1.4 77716 1xoiA 846 7.34e+01 1dl7H 112 7.34e+01 1f3rB b.1.1.1 20499 1ec6A 87 7.39e+01 1dt4A d.51.1.1 38804 1a7qH 116 7.44e+01 1gc1H b.1.1.1 19955 1bqhG 129 7.63e+01 1cd8 b.1.1.1 19715 1j57A 143 8.01e+01 d.221.1.1 77079 1huuA 90 8.05e+01 1huuA a.55.1.1 17897 1dt4A 73 8.14e+01 1dt4A d.51.1.1 38799 1aj3 110 8.31e+01 1cunA a.7.1.1 16319 1fs2A 272 8.34e+01 1fs1A a.158.1.1,c.10.1.3 19270,30864 1hnr 47 8.35e+01 1hnr a.155.1.1 17896 2evaA 307 8.40e+01 1g8fA 511 8.71e+01 1g8fA b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 2tbvA 387 8.92e+01 2tbvA b.121.4.7 23302