# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2ah5A 210 2.38e-03 1izmA 184 6.43e-01 a.199.1.1 90725 2fnaA 357 1.36e+00 2b49A 287 2.66e+00 1ku1A 230 3.11e+00 a.118.3.1 72996 1y37A 304 3.57e+00 1miwA 404 4.08e+00 a.173.1.1,d.218.1.4 79162,79163 2f1kA 279 4.19e+00 1zkrA 153 5.04e+00 1wuiL 534 5.50e+00 1ubkL 534 5.51e+00 e.18.1.1 88422 1h2rL 534 5.60e+00 1h2rL e.18.1.1 43298 1k0dA 260 6.90e+00 a.45.1.1,c.47.1.5 67930,67931 1pu6A 218 7.42e+00 a.96.1.5 95123 1uc8A 280 7.69e+00 c.30.1.6,d.142.1.7 99165,99166 1hyp 80 8.00e+00 1hyp a.52.1.1 17806 1ezwA 349 8.18e+00 1ezwA c.1.16.3 29558 1z83A 196 8.80e+00 1pysA 350 9.23e+00 1pysA d.104.1.1 40775 1t3tA 1303 9.24e+00 a.5.10.1,c.23.16.1,d.284.1.2,d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 106381,106382,106383,106384,106385,106386,106387 1o08A 221 9.56e+00 c.108.1.6 86525 2f2eA 146 1.03e+01 1g4yB 101 1.04e+01 1g4yB f.15.1.1 60251 1qf5A 431 1.07e+01 1adeA c.37.1.10 32212 1pgtA 210 1.09e+01 1pgtA a.45.1.1,c.47.1.5 17515,32809 2fbqA 235 1.12e+01 2go7A 207 1.18e+01 5pal 109 1.21e+01 1a75A a.39.1.4 17215 1ygtA 111 1.22e+01 1php 394 1.39e+01 16pk c.86.1.1 35452 1fc4A 401 1.41e+01 1bs0A c.67.1.4 59760 1oaoA 674 1.42e+01 e.26.1.2 86744 1owfB 94 1.58e+01 a.55.1.1 87488 1t06A 235 1.62e+01 a.118.1.17 106194 2cbiA 594 1.64e+01 1b7yA 350 1.64e+01 1pysA d.104.1.1 40776 1q1fA 151 1.66e+01 a.1.1.2 104476 1m5yA 408 1.70e+01 a.167.1.1,d.26.1.1,d.26.1.1 78664,78665,78666 1puoA 170 1.75e+01 a.101.1.1,a.101.1.1 95134,95135 1v32A 101 1.87e+01 a.42.1.1 100277 1o06A 20 1.90e+01 j.105.1.1 86524 1oj6A 151 1.99e+01 a.1.1.2 93088 1lbkA 208 2.00e+01 a.45.1.1,c.47.1.5 73809,73810 1t5oA 351 2.01e+01 c.124.1.5 106459 1wa8B 95 2.04e+01 2grrB 170 2.05e+01 1kzuB 41 2.12e+01 1kzuB f.3.1.1 43728 1nkzB 41 2.12e+01 f.3.1.1 80612 1jr8A 117 2.22e+01 a.24.15.1 67115 1cg5B 141 2.27e+01 1cg5B a.1.1.2 15585 1j09A 468 2.34e+01 a.97.1.1,c.26.1.1 77025,77026 2b25A 336 2.35e+01 1uhnA 189 2.41e+01 a.39.1.5 99399 2a2fX 325 2.41e+01 1nm8A 616 2.54e+01 c.43.1.3,c.43.1.3 85872,85873 1e19A 314 2.59e+01 1b7bA c.73.1.1 34967 1sf8A 126 2.61e+01 d.271.1.1 105472 1h97A 147 2.62e+01 1h97A a.1.1.2 60812 1ecmA 109 2.63e+01 1ecmA a.130.1.1 19492 1pvaA 110 2.69e+01 1a75A a.39.1.4 17207 1rh6A 55 2.70e+01 a.6.1.7 104935 1npyA 271 2.71e+01 c.2.1.7,c.58.1.5 85995,85996 1ukz 203 2.80e+01 1zin c.37.1.1 31840 1sly 618 2.84e+01 1qsaA a.118.5.1,d.2.1.6 19184,36990 1dik 874 2.86e+01 1dik c.1.12.2,c.8.1.1,d.142.1.5 29304,30702,41572 1brwA 433 2.89e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1vkjA 285 3.01e+01 c.37.1.5 108666 1wtyA 119 3.03e+01 1ez3A 127 3.04e+01 1dn1B a.47.2.1 17768 1kblA 873 3.13e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1cunA 213 3.15e+01 1cunA a.7.1.1,a.7.1.1 16313,16314 1nrlA 316 3.15e+01 a.123.1.1 92091 1tx4A 198 3.20e+01 1tx4A a.116.1.1 19098 1qsaA 618 3.22e+01 1qsaA a.118.5.1,d.2.1.6 19182,36988 2genA 197 3.24e+01 1a59 378 3.25e+01 1aj8A a.103.1.1 18902 1so2A 420 3.35e+01 a.211.1.2 98936 1z9hA 290 3.38e+01 1xvjA 109 3.40e+01 1ug0A 88 3.43e+01 a.217.1.1 107822 1ta9A 450 3.47e+01 1u4qA 322 3.48e+01 1a6i 217 3.65e+01 2tct a.4.1.9,a.121.1.1 16066,19243 1ww8A 439 3.77e+01 1kv9A 668 3.80e+01 a.3.1.6,b.70.1.1 73056,73057 1es5A 262 3.84e+01 1skf e.3.1.1 42679 1anv 356 3.87e+01 1anv a.54.1.1,g.51.1.1,g.51.1.1 17890,45365,45371 1fpzA 212 3.87e+01 1fpzA c.45.1.1 59976 1p77A 272 3.88e+01 c.2.1.7,c.58.1.5 94214,94215 1pm6A 72 3.99e+01 a.6.1.7 94894 1bkrA 109 4.00e+01 1bkrA a.40.1.1 17394 1bed 181 4.02e+01 1fvkA c.47.1.13 90330 1rwyA 109 4.03e+01 a.39.1.4 98002 1yviA 149 4.04e+01 1ug7A 128 4.04e+01 a.24.24.1 107824 1zwwA 256 4.06e+01 1zccA 248 4.12e+01 1rl4A 188 4.12e+01 d.167.1.1 97636 2g7sA 194 4.15e+01 1rpa 342 4.20e+01 1cviA c.60.1.2 33983 1adt 356 4.22e+01 1anv a.54.1.1,g.51.1.1,g.51.1.1 17887,45362,45368 1esiA 262 4.25e+01 1skf e.3.1.1 42682 1qwkA 317 4.25e+01 c.1.7.1 96482 1z8uA 102 4.33e+01 1wbeA 209 4.36e+01 2aq4A 434 4.39e+01 1kv4A 42 4.40e+01 j.4.1.3 73051 1f1eA 154 4.41e+01 a.22.1.2 64927 2cwcA 303 4.41e+01 1v4eA 299 4.42e+01 a.128.1.1 100296 1tfjA 219 4.45e+01 1gln 468 4.51e+01 1gln a.97.1.1,c.26.1.1 18752,31588 1hr6B 443 4.56e+01 1be3A d.185.1.1,d.185.1.1 61166,61167 1sz2A 332 4.63e+01 2axtJ 40 4.64e+01 1vflA 356 4.69e+01 2be4A 272 4.70e+01 1dw0A 112 4.74e+01 1dw0A a.3.1.1 15911 1xezA 721 4.81e+01 2fuqA 747 4.83e+01 1vp8A 201 4.83e+01 1eexA 554 4.89e+01 1dioA c.1.19.3 29650 1l0lB 439 4.93e+01 d.185.1.1,d.185.1.1 84484,84485 1cfr 285 4.95e+01 1cfr c.52.1.7 33312 1q77A 138 5.02e+01 c.26.2.4 96023 1v54A 514 5.04e+01 f.24.1.1 100321 1orjA 130 5.05e+01 a.24.19.1 93456 1z6gA 218 5.10e+01 1a48 306 5.12e+01 1a48 d.143.1.1 41590 1obdA 306 5.17e+01 d.143.1.1 86767 1bhdA 118 5.20e+01 1bkrA a.40.1.1 17398 1q18A 332 5.22e+01 c.55.1.7,c.55.1.7 104470,104471 1jnyA 435 5.25e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1g2nA 264 5.30e+01 1lbd a.123.1.1 60227 2baa 243 5.38e+01 1cnsA d.2.1.1 36243 2pvbA 107 5.42e+01 1a75A a.39.1.4 17205 1n2zA 245 5.52e+01 c.92.2.2 79865 1pbwA 216 5.57e+01 1pbwA a.116.1.1 19103 1wzzA 334 5.58e+01 1h5wA 309 5.63e+01 e.27.1.1 65635 1ppjB 439 5.63e+01 d.185.1.1,d.185.1.1 104254,104255 1zgmA 248 5.66e+01 2fnoA 248 5.66e+01 1z5zA 271 5.70e+01 1qf9A 194 5.71e+01 1zin c.37.1.1 31848 5ukdA 194 5.73e+01 1zin c.37.1.1 31851 2gtsA 86 5.74e+01 1qi9A 556 5.83e+01 1qhbA a.111.1.2 19053 1i7dA 659 5.87e+01 1d6mA e.10.1.1 61886 1vekA 84 5.93e+01 1uu1A 335 6.04e+01 c.67.1.1 99993 2occA 514 6.09e+01 2occA f.24.1.1 43518 1omoA 322 6.10e+01 c.2.1.13 104017 1qloA 34 6.11e+01 1qloA j.35.1.1 46281 1ytzT 107 6.20e+01 1iufA 144 6.29e+01 a.4.1.7,a.4.1.7 71439,71440 1u5pA 216 6.38e+01 1dk0A 188 6.44e+01 1b2vA d.35.1.1 38530 1vgoA 253 6.45e+01 1n83A 270 6.48e+01 a.123.1.1 80276 1te2A 226 6.60e+01 c.108.1.6 106792 1g2cA 52 6.69e+01 1g2cA h.3.2.1 45767 1k4nA 192 6.70e+01 d.32.1.5 72059 2tct 207 6.84e+01 2tct a.4.1.9,a.121.1.1 16063,19240 4cpv 109 6.84e+01 1a75A a.39.1.4 17198 1x0lA 333 6.85e+01 2b6cA 220 6.90e+01 1aquA 297 6.96e+01 1aquA c.37.1.5 31942 1fkx 349 6.96e+01 1a4mA c.1.9.1 29018 2a07F 93 6.97e+01 2cr9A 139 7.01e+01 1wkuA 254 7.04e+01 1zbpA 273 7.05e+01 1j5kA 89 7.08e+01 d.51.1.1 71565 2fiqA 420 7.12e+01 2fmlA 273 7.12e+01 2g0uA 92 7.14e+01 1vb3A 428 7.17e+01 1roaA 122 7.20e+01 d.17.1.2 105024 1e4yA 214 7.24e+01 1zin c.37.1.1,g.41.2.1 31901,45181 1sjdA 368 7.28e+01 c.1.11.2,d.54.1.1 105632,105633 2ng1 293 7.33e+01 1ng1 a.24.13.1,c.37.1.10 16962,32273 1w1iE 357 7.36e+01 c.1.9.1 109051 1vhqA 232 7.40e+01 c.23.16.2 100696 1i40A 175 7.40e+01 b.40.5.1 66024 1obwA 175 7.41e+01 2prd b.40.5.1 25416 1vi2A 300 7.45e+01 c.2.1.7,c.58.1.5 100726,100727 1oz9A 150 7.59e+01 d.92.1.15 93808 1o5hA 214 7.66e+01 a.191.1.1 92497 1kpsB 171 7.80e+01 a.118.12.1 68787 1sa3A 262 7.83e+01 c.52.1.23 105400 1agjA 242 7.86e+01 1agjA b.47.1.1 25827 2ftzA 284 7.94e+01 1t5yA 190 7.97e+01 b.122.1.1,d.17.6.3 106495,106496 1a4mA 349 8.04e+01 1a4mA c.1.9.1 29014 1wn0A 145 8.06e+01 2dkaA 544 8.09e+01 2ax8A 256 8.21e+01 1edg 380 8.34e+01 1edg c.1.8.3 28807 1iicA 422 8.37e+01 1nmtA d.108.1.2,d.108.1.2 62422,62423 1othA 321 8.43e+01 1othA c.78.1.1,c.78.1.1 35260,35261 1nh2D 121 8.46e+01 a.32.1.1,b.56.1.1 91876,91877 1f80D 81 8.46e+01 1acp a.28.1.1 59686 1dtjA 76 8.47e+01 1dt4A d.51.1.1 38800 1h5rA 293 8.58e+01 c.68.1.6 65623 1j5vA 351 8.59e+01 c.72.1.1 71585 1dxjA 242 8.60e+01 1cnsA d.2.1.1 36244 1lfkA 398 8.63e+01 a.104.1.1 77926 2cqnA 77 8.64e+01 1n46A 258 8.72e+01 a.123.1.1 85315 1m6sA 347 8.75e+01 c.67.1.1 78701 1jg8A 347 8.76e+01 1jg8A c.67.1.1 62946 1ofcX 304 8.81e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1y97A 238 8.83e+01 1xnfA 275 8.83e+01 1mtyG 162 8.84e+01 1mtyG a.23.3.1 16498 1l2tA 235 8.85e+01 c.37.1.12 73514 2gk3A 256 8.93e+01 1q0vA 81 8.95e+01 j.105.1.1 95514 1unlD 208 8.99e+01