# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2ah5A 210 2.20e-03 2f2eA 146 9.09e-01 1g8fA 511 1.03e+00 1g8fA b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1te2A 226 1.20e+00 c.108.1.6 106792 1vf1A 229 1.30e+00 2fnaA 357 1.41e+00 1vheA 373 1.61e+00 b.49.3.1,c.56.5.4 100669,100670 1b74A 254 3.62e+00 1b74A c.78.2.1,c.78.2.1 35264,35265 1j57A 143 3.98e+00 d.221.1.1 77079 1xdwA 331 4.20e+00 1tf5A 844 5.04e+00 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1kepA 348 6.15e+00 c.2.1.2 68536 1hyp 80 6.25e+00 1hyp a.52.1.1 17806 1ihoA 283 6.59e+00 1ihoA c.26.1.4 62390 2b8eA 273 7.57e+00 1ym3A 215 7.63e+00 1sf8A 126 7.99e+00 d.271.1.1 105472 2aorA 223 8.81e+00 2a5vA 213 8.81e+00 1gzsB 165 9.51e+00 a.168.1.1 76425 1h97A 147 1.01e+01 1h97A a.1.1.2 60812 1y37A 304 1.03e+01 1u5pA 216 1.18e+01 1pgtA 210 1.21e+01 1pgtA a.45.1.1,c.47.1.5 17515,32809 1vkjA 285 1.21e+01 c.37.1.5 108666 1cunA 213 1.23e+01 1cunA a.7.1.1,a.7.1.1 16313,16314 1mroB 442 1.25e+01 1mroB a.89.1.1,d.58.31.2 18531,39449 1hbnB 442 1.25e+01 1mroB a.89.1.1,d.58.31.2 60900,60901 1zkrA 153 1.27e+01 1u4qA 322 1.38e+01 1roaA 122 1.39e+01 d.17.1.2 105024 1lbkA 208 1.39e+01 a.45.1.1,c.47.1.5 73809,73810 1vhqA 232 1.46e+01 c.23.16.2 100696 1qq5A 253 1.53e+01 1qq5A c.108.1.1 43327 1o08A 221 1.54e+01 c.108.1.6 86525 1wwzA 159 1.61e+01 1bhdA 118 1.61e+01 1bkrA a.40.1.1 17398 1ug7A 128 1.71e+01 a.24.24.1 107824 1xhlA 297 1.74e+01 c.2.1.2 109591 2fnoA 248 1.80e+01 1e6yB 433 1.84e+01 1mroB a.89.1.1,d.58.31.2 18535,39453 1qq7A 253 1.97e+01 1qq5A c.108.1.1 43329 1j5uA 136 2.02e+01 d.208.1.1 71584 1ay7B 89 2.03e+01 1ay7B c.9.1.1 30836 2amhA 207 2.10e+01 1b7yA 350 2.12e+01 1pysA d.104.1.1 40776 1oc2A 348 2.26e+01 c.2.1.2 92765 2kfnA 605 2.26e+01 1xwl c.55.3.5,e.8.1.1 33682,42975 1tw7A 99 2.26e+01 1tc5A 194 2.28e+01 c.110.1.1 106752 1o0xA 262 2.29e+01 d.127.1.1 80755 1hqsA 423 2.38e+01 1iso c.77.1.1 61154 2grrB 170 2.39e+01 1zgmA 248 2.50e+01 1ad4A 266 2.51e+01 1aj2 c.1.21.1 29670 1n2zA 245 2.63e+01 c.92.2.2 79865 2cwcA 303 2.66e+01 1pvmA 184 2.71e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1rh6A 55 2.72e+01 a.6.1.7 104935 1puoA 170 2.73e+01 a.101.1.1,a.101.1.1 95134,95135 1fo1A 271 2.74e+01 1fo1A c.10.2.3,d.58.7.2 30869,39213 5ukdA 194 2.79e+01 1zin c.37.1.1 31851 1goiA 499 2.80e+01 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 1wywA 230 2.80e+01 1r6wA 322 2.83e+01 c.1.11.2,d.54.1.1 97165,97166 2fg9A 178 2.83e+01 1qf9A 194 2.84e+01 1zin c.37.1.1 31848 1q77A 138 3.04e+01 c.26.2.4 96023 1uf2A 1019 3.08e+01 e.28.1.2 99289 2czdA 208 3.10e+01 1kzkA 99 3.13e+01 b.50.1.1 73371 1ezwA 349 3.20e+01 1ezwA c.1.16.3 29558 1nh0A 99 3.26e+01 b.50.1.1 91869 4cpv 109 3.26e+01 1a75A a.39.1.4 17198 1bed 181 3.36e+01 1fvkA c.47.1.13 90330 1bd3A 243 3.37e+01 1bd3A c.61.1.1 34098 1difA 99 3.48e+01 1fmb b.50.1.1 26503 1s1eA 224 3.61e+01 1ujqA 305 3.65e+01 c.1.12.7 99463 1e6pA 499 3.67e+01 1e15A b.72.2.1,c.1.8.5,d.26.3.1 59314,59315,59316 1izmA 184 3.71e+01 a.199.1.1 90725 1ecrA 309 3.76e+01 1ecrA e.2.1.1 42678 2fokA 579 3.92e+01 2fokA a.4.5.12,a.4.5.12,a.4.5.12,c.52.1.12 16131,16132,16133,33323 1jnyA 435 3.96e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1oaoA 674 4.03e+01 e.26.1.2 86744 1pysA 350 4.12e+01 1pysA d.104.1.1 40775 1r3eA 309 4.16e+01 b.122.1.1,d.265.1.2 96907,96908 1pm6A 72 4.34e+01 a.6.1.7 94894 1ut9A 609 4.47e+01 a.102.1.2,b.1.18.2 99912,99913 1o22A 170 4.50e+01 d.238.1.1 86557 1jkeA 145 4.53e+01 c.110.1.1 66791 1mwmA 320 4.53e+01 c.55.1.1,c.55.1.1 79580,79581 1a59 378 4.54e+01 1aj8A a.103.1.1 18902 1zybA 232 4.58e+01 1rm6C 161 4.62e+01 1fhuA 320 4.65e+01 1fhuA c.1.11.2,d.54.1.1 29234,38878 1tjyA 316 4.68e+01 c.93.1.1 107062 1odfA 290 4.68e+01 c.37.1.6 92782 1wtyA 119 4.83e+01 1v72A 356 4.92e+01 1n82A 331 4.96e+01 c.1.8.3 91703 1p1mA 406 4.98e+01 b.92.1.4,c.1.9.9 87696,87697 1zq6A 359 5.00e+01 2gtqA 867 5.22e+01 2gtsA 86 5.24e+01 1umgA 362 5.25e+01 d.280.1.1 107956 2cr9A 139 5.28e+01 1qazA 351 5.29e+01 1qazA a.102.3.1 18848 1r0dA 206 5.37e+01 a.216.1.1 104715 1j2zA 270 5.45e+01 b.81.1.1 90805 1n7zA 334 5.47e+01 b.127.1.1 85380 1aquA 297 5.49e+01 1aquA c.37.1.5 31942 1cpcB 172 5.52e+01 1qgwC a.1.1.3 15644 1ufwA 95 5.52e+01 d.58.7.1 99358 1nkqA 259 5.54e+01 d.177.1.1 103862 1mxrA 375 5.57e+01 a.25.1.2 85197 1yb5A 351 5.62e+01 1sig 339 5.83e+01 1sig a.177.1.1 19068 2f7tA 227 5.83e+01 1n9lA 109 5.87e+01 d.110.3.6 85468 1z3eA 132 5.90e+01 1yiiA 320 6.03e+01 1mtzA 293 6.13e+01 c.69.1.7 79467 1w9gA 104 6.13e+01 1w36C 1122 6.13e+01 1e0bA 68 6.14e+01 1e0bA b.34.13.2 37476 1kpsB 171 6.23e+01 a.118.12.1 68787 1j6pA 418 6.29e+01 b.92.1.4,c.1.9.9 77089,77090 2fwkA 121 6.33e+01 1iufA 144 6.34e+01 a.4.1.7,a.4.1.7 71439,71440 1vqoX 92 6.43e+01 1nq6A 302 6.43e+01 c.1.8.3 92046 1ldg 316 6.55e+01 1ceqA c.2.1.5,d.162.1.1 30165,42132 1wy0A 342 6.58e+01 5pal 109 6.65e+01 1a75A a.39.1.4 17215 1hh2P 344 6.74e+01 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 65835,65836,65837,65838 1go3E 187 6.83e+01 b.40.4.5,d.230.1.1 83054,83055 1yh1A 359 7.06e+01 1obdA 306 7.09e+01 d.143.1.1 86767 1wxaA 116 7.35e+01 1yw0A 276 7.47e+01 2ct8A 497 7.51e+01 2bl0B 145 7.54e+01 1i6aA 219 7.60e+01 c.94.1.1 61827 1swvA 267 7.62e+01 1mw7A 240 7.64e+01 e.39.1.1 79557 1t2dA 322 7.66e+01 c.2.1.5,d.162.1.1 99084,99085 2go7A 207 7.85e+01 1wz7A 111 7.85e+01 1e2wA 251 7.89e+01 1hcz b.2.6.1,b.84.2.2 22466,28252 1rxdA 159 7.90e+01 1mq4A 272 7.93e+01 d.144.1.7 91391 1xikA 375 7.95e+01 1xikA a.25.1.2 16784 1xc5A 71 8.06e+01 1a48 306 8.20e+01 1a48 d.143.1.1 41590 2ganA 190 8.22e+01 1lo7A 141 8.24e+01 d.38.1.1 74144 1iwmA 186 8.39e+01 b.125.1.2 83758 1n62A 166 8.47e+01 a.56.1.1,d.15.4.2 80090,80091 1j7gA 144 8.49e+01 c.110.1.1 84130 1knvA 293 8.49e+01 c.52.1.7 68707 1o59A 355 8.55e+01 b.18.1.22,b.18.1.22 92495,92496 1bvqA 141 8.56e+01 1bvqA d.38.1.1 38542 2abqA 306 8.59e+01 1po5A 476 8.61e+01 a.104.1.1 94963 1xgkA 352 8.65e+01 1u6zA 513 8.70e+01 1l5xA 280 8.72e+01 c.106.1.1 77718 1t0tV 248 8.73e+01 d.58.4.10 106229 1k0dA 260 8.74e+01 a.45.1.1,c.47.1.5 67930,67931 2c5uA 375 8.78e+01 1s72X 92 8.90e+01 d.29.1.1 105343 1jmkC 230 8.90e+01 c.69.1.22 71747 1fezA 256 8.90e+01 1fezA c.108.1.3 43343 1sw5B 275 8.94e+01 c.94.1.1 106070 1ml4A 308 8.96e+01 c.78.1.1,c.78.1.1 79255,79256 1hx0A 496 8.96e+01 b.71.1.1,c.1.8.1 61346,61347 1ku1A 230 8.96e+01 a.118.3.1 72996