# TARGET T0302 # Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0302.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 342 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 S 0.003 0.002 0.001 0.006 0.046 0.943 2 M 0.013 0.019 0.005 0.022 0.070 0.870 3 V 0.015 0.013 0.004 0.037 0.115 0.816 4 S 0.009 0.004 0.005 0.091 0.097 0.793 5 P 0.003 0.001 0.014 0.806 0.067 0.109 6 E 0.004 0.002 0.019 0.829 0.090 0.057 7 E 0.003 0.001 0.023 0.840 0.099 0.034 8 A 0.005 0.002 0.018 0.859 0.082 0.034 9 V 0.002 0.002 0.020 0.824 0.100 0.052 10 K 0.003 0.002 0.021 0.684 0.147 0.143 11 W 0.004 0.001 0.021 0.633 0.144 0.197 12 G 0.009 0.008 0.021 0.513 0.179 0.270 13 E 0.015 0.013 0.023 0.540 0.167 0.242 14 S 0.013 0.011 0.010 0.241 0.124 0.600 15 F 0.001 0.001 0.029 0.943 0.014 0.012 16 D 0.001 0.001 0.054 0.929 0.013 0.003 17 K 0.001 0.001 0.070 0.914 0.013 0.002 18 L 0.001 0.001 0.064 0.913 0.018 0.003 19 L 0.001 0.001 0.018 0.921 0.039 0.019 20 S 0.001 0.002 0.010 0.623 0.119 0.247 21 H 0.001 0.001 0.001 0.092 0.045 0.863 22 R 0.001 0.001 0.004 0.969 0.010 0.017 23 D 0.001 0.001 0.009 0.976 0.012 0.003 24 G 0.001 0.001 0.013 0.977 0.009 0.001 25 L 0.001 0.001 0.004 0.992 0.004 0.001 26 E 0.001 0.001 0.002 0.995 0.002 0.001 27 A 0.001 0.001 0.001 0.996 0.001 0.001 28 F 0.001 0.001 0.001 0.997 0.001 0.001 29 T 0.001 0.001 0.001 0.997 0.001 0.001 30 R 0.001 0.001 0.002 0.996 0.002 0.001 31 F 0.001 0.001 0.002 0.994 0.002 0.002 32 L 0.001 0.001 0.005 0.980 0.009 0.006 33 K 0.001 0.001 0.009 0.951 0.025 0.014 34 T 0.001 0.001 0.009 0.855 0.069 0.066 35 E 0.003 0.002 0.010 0.652 0.155 0.179 36 F 0.006 0.009 0.039 0.360 0.285 0.300 37 S 0.014 0.009 0.055 0.348 0.355 0.219 38 E 0.006 0.002 0.084 0.686 0.169 0.053 39 E 0.004 0.003 0.069 0.799 0.085 0.041 40 N 0.017 0.002 0.021 0.728 0.082 0.149 41 I 0.018 0.002 0.011 0.884 0.029 0.056 42 E 0.013 0.004 0.006 0.914 0.018 0.045 43 F 0.013 0.001 0.005 0.952 0.009 0.020 44 W 0.005 0.001 0.005 0.978 0.005 0.007 45 I 0.004 0.001 0.006 0.977 0.006 0.007 46 A 0.003 0.001 0.005 0.982 0.003 0.006 47 C 0.001 0.001 0.003 0.988 0.003 0.005 48 E 0.002 0.001 0.004 0.984 0.007 0.004 49 D 0.001 0.001 0.005 0.973 0.012 0.009 50 F 0.002 0.001 0.006 0.956 0.022 0.013 51 K 0.004 0.001 0.011 0.925 0.039 0.021 52 K 0.005 0.001 0.013 0.856 0.074 0.053 53 S 0.005 0.003 0.014 0.716 0.114 0.148 54 K 0.005 0.009 0.011 0.219 0.214 0.543 55 G 0.002 0.004 0.007 0.070 0.263 0.653 56 P 0.002 0.001 0.068 0.510 0.276 0.143 57 Q 0.003 0.002 0.079 0.597 0.241 0.078 58 Q 0.005 0.004 0.086 0.687 0.146 0.072 59 I 0.005 0.006 0.022 0.818 0.061 0.087 60 H 0.001 0.001 0.006 0.968 0.013 0.013 61 L 0.001 0.001 0.004 0.982 0.007 0.007 62 K 0.001 0.001 0.003 0.988 0.004 0.004 63 A 0.001 0.001 0.002 0.989 0.003 0.004 64 K 0.001 0.001 0.001 0.996 0.002 0.002 65 A 0.001 0.001 0.001 0.994 0.003 0.002 66 I 0.001 0.001 0.001 0.991 0.003 0.004 67 Y 0.001 0.001 0.003 0.983 0.006 0.006 68 E 0.001 0.001 0.005 0.980 0.008 0.006 69 K 0.002 0.001 0.005 0.961 0.016 0.015 70 F 0.004 0.001 0.007 0.902 0.034 0.053 71 I 0.013 0.009 0.020 0.719 0.081 0.158 72 Q 0.021 0.011 0.038 0.482 0.311 0.136 73 T 0.017 0.004 0.048 0.336 0.393 0.202 74 D 0.011 0.003 0.018 0.034 0.544 0.390 75 A 0.053 0.023 0.017 0.016 0.575 0.316 76 P 0.097 0.019 0.015 0.015 0.372 0.482 77 K 0.152 0.015 0.028 0.014 0.342 0.448 78 E 0.303 0.020 0.029 0.008 0.251 0.389 79 V 0.483 0.024 0.019 0.009 0.176 0.289 80 N 0.364 0.037 0.010 0.004 0.163 0.421 81 L 0.181 0.055 0.003 0.005 0.128 0.628 82 D 0.046 0.007 0.003 0.022 0.177 0.744 83 F 0.001 0.001 0.011 0.942 0.034 0.012 84 H 0.001 0.001 0.006 0.971 0.019 0.003 85 T 0.001 0.001 0.006 0.982 0.009 0.002 86 K 0.002 0.001 0.003 0.986 0.005 0.004 87 E 0.003 0.001 0.003 0.988 0.004 0.002 88 V 0.004 0.001 0.009 0.976 0.007 0.004 89 I 0.004 0.001 0.005 0.970 0.010 0.011 90 T 0.003 0.001 0.015 0.959 0.014 0.008 91 N 0.003 0.001 0.018 0.913 0.038 0.027 92 S 0.002 0.001 0.028 0.829 0.079 0.061 93 I 0.009 0.009 0.043 0.593 0.221 0.125 94 T 0.004 0.004 0.041 0.416 0.355 0.180 95 Q 0.004 0.004 0.017 0.148 0.397 0.430 96 P 0.003 0.005 0.009 0.037 0.407 0.538 97 T 0.003 0.011 0.006 0.021 0.328 0.630 98 L 0.004 0.005 0.121 0.330 0.373 0.167 99 H 0.004 0.006 0.197 0.503 0.214 0.075 100 S 0.003 0.005 0.161 0.690 0.077 0.063 101 F 0.001 0.001 0.015 0.955 0.011 0.017 102 D 0.001 0.001 0.002 0.987 0.004 0.006 103 A 0.001 0.001 0.001 0.998 0.001 0.001 104 A 0.001 0.001 0.001 0.999 0.001 0.001 105 Q 0.001 0.001 0.001 0.999 0.001 0.001 106 S 0.001 0.001 0.001 0.999 0.001 0.001 107 R 0.001 0.001 0.001 0.999 0.001 0.001 108 V 0.001 0.001 0.001 0.999 0.001 0.001 109 Y 0.001 0.001 0.001 0.997 0.001 0.001 110 Q 0.001 0.001 0.002 0.994 0.003 0.001 111 L 0.001 0.001 0.004 0.983 0.008 0.004 112 M 0.001 0.001 0.005 0.962 0.015 0.016 113 E 0.001 0.003 0.013 0.908 0.038 0.037 114 Q 0.001 0.001 0.022 0.875 0.054 0.047 115 D 0.003 0.002 0.024 0.766 0.101 0.104 116 S 0.004 0.005 0.032 0.716 0.102 0.141 117 Y 0.006 0.006 0.041 0.666 0.125 0.155 118 T 0.002 0.001 0.158 0.766 0.055 0.018 119 R 0.001 0.001 0.227 0.700 0.060 0.012 120 F 0.001 0.001 0.225 0.712 0.050 0.012 121 L 0.001 0.003 0.100 0.829 0.046 0.021 122 K 0.001 0.002 0.036 0.718 0.101 0.142 123 S 0.001 0.001 0.026 0.442 0.109 0.422 124 D 0.001 0.001 0.062 0.755 0.077 0.104 125 I 0.001 0.001 0.090 0.841 0.054 0.013 126 Y 0.001 0.001 0.072 0.887 0.034 0.005 127 L 0.001 0.001 0.062 0.896 0.037 0.005 128 D 0.001 0.001 0.058 0.886 0.043 0.011 129 L 0.001 0.003 0.057 0.886 0.034 0.020 130 M 0.003 0.010 0.035 0.809 0.048 0.095 131 E 0.004 0.004 0.027 0.663 0.055 0.247 132 G 0.001 0.001 0.001 0.018 0.016 0.965