# TARGET T0302 # Using neural net dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t1c2-str2-from-empty.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0302.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 342 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 S 0.001 0.017 0.444 0.005 0.007 0.006 0.001 0.001 0.021 0.249 0.202 0.011 0.036 2 M 0.001 0.049 0.721 0.001 0.001 0.001 0.001 0.001 0.024 0.100 0.035 0.045 0.020 3 V 0.001 0.089 0.816 0.001 0.001 0.002 0.001 0.001 0.005 0.057 0.005 0.004 0.022 4 S 0.001 0.007 0.960 0.001 0.001 0.005 0.001 0.001 0.001 0.025 0.001 0.001 0.001 5 P 0.001 0.001 0.008 0.001 0.032 0.942 0.001 0.001 0.001 0.001 0.017 0.001 0.001 6 E 0.001 0.001 0.001 0.001 0.059 0.933 0.001 0.001 0.001 0.001 0.007 0.001 0.001 7 E 0.001 0.001 0.001 0.001 0.059 0.939 0.001 0.001 0.001 0.001 0.001 0.001 0.001 8 A 0.001 0.001 0.001 0.001 0.017 0.978 0.001 0.001 0.001 0.001 0.003 0.001 0.001 9 V 0.001 0.001 0.001 0.001 0.011 0.932 0.001 0.001 0.001 0.001 0.054 0.001 0.001 10 K 0.001 0.001 0.003 0.001 0.008 0.882 0.001 0.001 0.001 0.004 0.102 0.001 0.001 11 W 0.001 0.001 0.039 0.001 0.009 0.810 0.001 0.001 0.001 0.028 0.112 0.001 0.001 12 G 0.001 0.008 0.349 0.001 0.022 0.345 0.001 0.001 0.001 0.114 0.156 0.004 0.001 13 E 0.001 0.010 0.210 0.001 0.025 0.316 0.001 0.001 0.001 0.279 0.153 0.001 0.005 14 S 0.001 0.040 0.355 0.001 0.008 0.410 0.001 0.001 0.001 0.135 0.045 0.001 0.004 15 F 0.001 0.001 0.002 0.001 0.013 0.980 0.001 0.001 0.001 0.001 0.005 0.001 0.001 16 D 0.001 0.001 0.001 0.001 0.028 0.968 0.001 0.001 0.001 0.001 0.003 0.001 0.001 17 K 0.001 0.001 0.001 0.001 0.076 0.917 0.001 0.001 0.001 0.001 0.006 0.001 0.001 18 L 0.001 0.002 0.002 0.001 0.063 0.912 0.001 0.001 0.001 0.001 0.019 0.001 0.001 19 L 0.001 0.001 0.004 0.001 0.021 0.646 0.001 0.001 0.001 0.004 0.324 0.001 0.001 20 S 0.001 0.001 0.018 0.001 0.016 0.455 0.001 0.001 0.001 0.025 0.486 0.001 0.001 21 H 0.001 0.001 0.664 0.001 0.002 0.179 0.001 0.001 0.001 0.141 0.012 0.001 0.001 22 R 0.001 0.001 0.040 0.001 0.016 0.834 0.001 0.001 0.001 0.017 0.093 0.001 0.001 23 D 0.001 0.002 0.021 0.001 0.024 0.777 0.001 0.001 0.001 0.032 0.144 0.001 0.001 24 G 0.001 0.001 0.026 0.001 0.008 0.945 0.001 0.001 0.001 0.008 0.010 0.001 0.001 25 L 0.001 0.001 0.002 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.001 0.001 0.001 26 E 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 27 A 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 28 F 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 29 T 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.003 0.001 0.001 30 R 0.001 0.001 0.001 0.001 0.002 0.964 0.001 0.001 0.001 0.001 0.033 0.001 0.001 31 F 0.001 0.001 0.001 0.001 0.003 0.928 0.001 0.001 0.001 0.001 0.066 0.001 0.001 32 L 0.001 0.003 0.043 0.001 0.011 0.892 0.001 0.001 0.001 0.015 0.035 0.001 0.001 33 K 0.001 0.003 0.065 0.001 0.046 0.823 0.001 0.001 0.001 0.022 0.039 0.001 0.001 34 T 0.001 0.001 0.040 0.001 0.056 0.774 0.001 0.001 0.001 0.034 0.088 0.001 0.003 35 E 0.001 0.005 0.047 0.001 0.039 0.630 0.001 0.001 0.004 0.057 0.211 0.002 0.003 36 F 0.001 0.013 0.225 0.001 0.027 0.252 0.001 0.001 0.005 0.222 0.251 0.001 0.003 37 S 0.001 0.018 0.369 0.001 0.053 0.404 0.001 0.001 0.001 0.078 0.075 0.001 0.002 38 E 0.001 0.001 0.015 0.001 0.185 0.740 0.001 0.001 0.001 0.007 0.053 0.001 0.001 39 E 0.001 0.001 0.011 0.001 0.167 0.760 0.001 0.001 0.001 0.014 0.047 0.001 0.001 40 N 0.001 0.001 0.016 0.001 0.073 0.851 0.001 0.001 0.002 0.005 0.052 0.001 0.001 41 I 0.001 0.002 0.008 0.001 0.022 0.947 0.001 0.001 0.001 0.004 0.015 0.001 0.001 42 E 0.001 0.001 0.006 0.001 0.013 0.961 0.001 0.001 0.001 0.003 0.016 0.001 0.001 43 F 0.001 0.001 0.006 0.001 0.006 0.969 0.001 0.001 0.001 0.003 0.015 0.001 0.001 44 W 0.001 0.001 0.003 0.001 0.005 0.987 0.001 0.001 0.001 0.001 0.004 0.001 0.001 45 I 0.001 0.001 0.001 0.001 0.005 0.989 0.001 0.001 0.001 0.001 0.004 0.001 0.001 46 A 0.001 0.001 0.001 0.001 0.004 0.985 0.001 0.001 0.001 0.001 0.009 0.001 0.001 47 C 0.001 0.001 0.006 0.001 0.002 0.987 0.001 0.001 0.001 0.001 0.003 0.001 0.001 48 E 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.003 0.001 0.001 49 D 0.001 0.001 0.001 0.001 0.002 0.986 0.001 0.001 0.001 0.001 0.010 0.001 0.001 50 F 0.001 0.001 0.005 0.001 0.005 0.979 0.001 0.001 0.001 0.001 0.010 0.001 0.001 51 K 0.001 0.001 0.008 0.001 0.011 0.958 0.001 0.001 0.001 0.001 0.020 0.001 0.001 52 K 0.001 0.001 0.010 0.001 0.027 0.856 0.001 0.001 0.001 0.007 0.098 0.001 0.001 53 S 0.001 0.001 0.034 0.001 0.027 0.689 0.001 0.001 0.001 0.029 0.217 0.001 0.001 54 K 0.001 0.007 0.231 0.001 0.013 0.359 0.001 0.001 0.001 0.146 0.242 0.001 0.001 55 G 0.001 0.004 0.730 0.001 0.003 0.092 0.001 0.001 0.001 0.154 0.016 0.001 0.001 56 P 0.001 0.001 0.246 0.001 0.012 0.671 0.001 0.001 0.001 0.030 0.040 0.001 0.001 57 Q 0.001 0.001 0.020 0.001 0.027 0.890 0.001 0.001 0.001 0.009 0.053 0.001 0.001 58 Q 0.001 0.001 0.016 0.001 0.028 0.921 0.001 0.001 0.002 0.006 0.026 0.001 0.001 59 I 0.001 0.001 0.006 0.001 0.018 0.960 0.001 0.001 0.001 0.003 0.011 0.001 0.001 60 H 0.001 0.001 0.006 0.001 0.004 0.982 0.001 0.001 0.001 0.001 0.006 0.001 0.001 61 L 0.001 0.001 0.001 0.001 0.002 0.985 0.001 0.001 0.001 0.001 0.012 0.001 0.001 62 K 0.001 0.001 0.002 0.001 0.001 0.979 0.001 0.001 0.001 0.001 0.017 0.001 0.001 63 A 0.001 0.001 0.003 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.001 0.001 0.001 64 K 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.001 0.001 0.001 65 A 0.001 0.001 0.001 0.001 0.001 0.991 0.001 0.001 0.001 0.001 0.008 0.001 0.001 66 I 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.005 0.001 0.001 67 Y 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 68 E 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 69 K 0.001 0.001 0.001 0.001 0.005 0.987 0.001 0.001 0.001 0.001 0.006 0.001 0.001 70 F 0.001 0.001 0.001 0.001 0.007 0.973 0.001 0.001 0.001 0.001 0.017 0.001 0.001 71 I 0.001 0.003 0.008 0.001 0.012 0.906 0.001 0.001 0.001 0.007 0.064 0.001 0.001 72 Q 0.001 0.002 0.093 0.001 0.042 0.603 0.001 0.001 0.001 0.030 0.226 0.001 0.001 73 T 0.001 0.002 0.046 0.001 0.032 0.195 0.001 0.001 0.001 0.070 0.653 0.001 0.001 74 D 0.001 0.003 0.104 0.001 0.015 0.046 0.001 0.001 0.002 0.188 0.640 0.001 0.001 75 A 0.001 0.006 0.603 0.001 0.006 0.007 0.001 0.001 0.005 0.309 0.058 0.003 0.002 76 P 0.001 0.020 0.673 0.006 0.012 0.008 0.001 0.001 0.011 0.141 0.088 0.010 0.030 77 K 0.002 0.021 0.441 0.007 0.017 0.007 0.005 0.002 0.054 0.153 0.171 0.078 0.043 78 E 0.006 0.034 0.454 0.010 0.010 0.004 0.013 0.003 0.093 0.083 0.025 0.059 0.206 79 V 0.007 0.047 0.395 0.005 0.002 0.003 0.015 0.001 0.138 0.036 0.006 0.233 0.113 80 N 0.001 0.019 0.686 0.005 0.005 0.004 0.003 0.001 0.107 0.022 0.015 0.028 0.103 81 L 0.001 0.032 0.556 0.002 0.031 0.074 0.002 0.001 0.020 0.136 0.104 0.025 0.018 82 D 0.001 0.008 0.704 0.001 0.012 0.098 0.001 0.001 0.003 0.113 0.050 0.001 0.009 83 F 0.001 0.001 0.028 0.001 0.019 0.879 0.001 0.001 0.001 0.012 0.060 0.001 0.001 84 H 0.001 0.002 0.033 0.001 0.009 0.917 0.001 0.001 0.001 0.014 0.023 0.001 0.001 85 T 0.001 0.001 0.016 0.001 0.005 0.967 0.001 0.001 0.001 0.002 0.004 0.001 0.003 86 K 0.001 0.001 0.001 0.001 0.002 0.991 0.001 0.001 0.001 0.001 0.003 0.001 0.001 87 E 0.001 0.001 0.001 0.001 0.001 0.990 0.001 0.001 0.001 0.001 0.006 0.001 0.001 88 V 0.001 0.001 0.001 0.001 0.002 0.977 0.001 0.001 0.001 0.001 0.017 0.001 0.001 89 I 0.001 0.003 0.015 0.001 0.004 0.930 0.001 0.001 0.001 0.008 0.035 0.001 0.001 90 T 0.001 0.005 0.030 0.001 0.024 0.880 0.001 0.001 0.001 0.013 0.041 0.001 0.003 91 N 0.001 0.001 0.024 0.001 0.051 0.790 0.001 0.001 0.001 0.017 0.114 0.001 0.001 92 S 0.001 0.002 0.063 0.001 0.061 0.655 0.001 0.001 0.001 0.026 0.187 0.001 0.003 93 I 0.001 0.010 0.181 0.001 0.052 0.524 0.001 0.001 0.004 0.058 0.166 0.001 0.003 94 T 0.001 0.028 0.275 0.003 0.026 0.178 0.001 0.001 0.006 0.153 0.318 0.006 0.004 95 Q 0.001 0.007 0.587 0.001 0.012 0.040 0.001 0.001 0.004 0.275 0.071 0.001 0.002 96 P 0.001 0.012 0.532 0.001 0.020 0.093 0.001 0.001 0.002 0.231 0.103 0.002 0.005 97 T 0.001 0.022 0.580 0.001 0.032 0.166 0.001 0.001 0.002 0.133 0.058 0.002 0.003 98 L 0.001 0.002 0.135 0.001 0.076 0.703 0.001 0.001 0.001 0.027 0.055 0.001 0.001 99 H 0.001 0.001 0.027 0.001 0.058 0.824 0.001 0.001 0.001 0.013 0.076 0.001 0.001 100 S 0.001 0.001 0.014 0.001 0.036 0.916 0.001 0.001 0.001 0.005 0.027 0.001 0.001 101 F 0.001 0.001 0.017 0.001 0.003 0.970 0.001 0.001 0.001 0.004 0.004 0.001 0.001 102 D 0.001 0.001 0.002 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.001 0.001 0.001 103 A 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 104 A 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 105 Q 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 106 S 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 107 R 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 108 V 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 109 Y 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 110 Q 0.001 0.001 0.001 0.001 0.001 0.987 0.001 0.001 0.001 0.001 0.010 0.001 0.001 111 L 0.001 0.001 0.001 0.001 0.001 0.983 0.001 0.001 0.001 0.001 0.014 0.001 0.001 112 M 0.001 0.001 0.020 0.001 0.004 0.951 0.001 0.001 0.001 0.004 0.019 0.001 0.001 113 E 0.001 0.002 0.034 0.001 0.019 0.897 0.001 0.001 0.001 0.008 0.039 0.001 0.001 114 Q 0.001 0.002 0.042 0.001 0.027 0.817 0.001 0.001 0.001 0.019 0.090 0.001 0.001 115 D 0.001 0.002 0.145 0.001 0.019 0.650 0.001 0.001 0.005 0.076 0.099 0.002 0.001 116 S 0.001 0.010 0.227 0.001 0.021 0.422 0.001 0.001 0.004 0.084 0.208 0.006 0.012 117 Y 0.003 0.024 0.250 0.003 0.043 0.367 0.001 0.001 0.005 0.100 0.166 0.015 0.023 118 T 0.001 0.007 0.193 0.003 0.120 0.471 0.001 0.001 0.004 0.058 0.125 0.004 0.012 119 R 0.001 0.005 0.106 0.003 0.178 0.513 0.001 0.002 0.005 0.043 0.127 0.009 0.009 120 F 0.001 0.005 0.081 0.002 0.207 0.486 0.001 0.002 0.010 0.053 0.133 0.004 0.017 121 L 0.001 0.012 0.131 0.001 0.067 0.549 0.001 0.001 0.008 0.098 0.122 0.006 0.003 122 K 0.001 0.021 0.328 0.001 0.011 0.455 0.001 0.001 0.003 0.094 0.073 0.004 0.010 123 S 0.001 0.005 0.279 0.001 0.002 0.644 0.001 0.001 0.001 0.058 0.008 0.001 0.002 124 D 0.001 0.001 0.002 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.004 0.001 0.001 125 I 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 126 Y 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 127 L 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 128 D 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.003 0.001 0.001 129 L 0.001 0.001 0.001 0.001 0.001 0.982 0.001 0.001 0.001 0.001 0.016 0.001 0.001 130 M 0.001 0.001 0.006 0.001 0.003 0.854 0.001 0.001 0.001 0.007 0.129 0.001 0.001 131 E 0.001 0.004 0.075 0.001 0.008 0.385 0.001 0.001 0.001 0.049 0.476 0.001 0.001 132 G 0.001 0.004 0.323 0.001 0.012 0.145 0.001 0.001 0.001 0.280 0.233 0.001 0.001