# TARGET T0302 # Using neural net dunbrack-40pc-3157-t06-IDGaaH13-3-13-7-13-9-13-11-pb-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 16 (1 pb ) # The input amino acid frequencies were determined from # alignment /projects/compbio/experiments/protein-predict/casp7/T0302/T0302.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 342 # Pos AA A B C D E F G H I J K L M N O P 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 S 0.108 0.064 0.163 0.168 0.002 0.053 0.023 0.010 0.015 0.009 0.031 0.110 0.159 0.004 0.030 0.053 2 M 0.064 0.070 0.326 0.149 0.004 0.059 0.017 0.002 0.008 0.004 0.044 0.024 0.106 0.004 0.005 0.114 3 V 0.040 0.111 0.364 0.402 0.001 0.009 0.003 0.003 0.001 0.001 0.008 0.017 0.024 0.001 0.004 0.011 4 S 0.001 0.002 0.009 0.010 0.001 0.943 0.001 0.001 0.001 0.002 0.002 0.007 0.021 0.001 0.001 0.001 5 P 0.001 0.004 0.001 0.001 0.001 0.019 0.001 0.001 0.001 0.001 0.956 0.002 0.017 0.001 0.001 0.001 6 E 0.001 0.012 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.954 0.018 0.001 0.001 0.001 7 E 0.001 0.002 0.008 0.005 0.001 0.007 0.003 0.001 0.001 0.001 0.005 0.040 0.917 0.002 0.002 0.008 8 A 0.001 0.002 0.024 0.004 0.001 0.007 0.018 0.001 0.001 0.001 0.011 0.008 0.910 0.005 0.002 0.008 9 V 0.001 0.012 0.012 0.010 0.001 0.006 0.012 0.001 0.001 0.001 0.006 0.030 0.897 0.002 0.007 0.004 10 K 0.005 0.005 0.018 0.027 0.004 0.013 0.030 0.004 0.003 0.002 0.013 0.008 0.627 0.134 0.010 0.099 11 W 0.012 0.025 0.093 0.025 0.001 0.008 0.007 0.010 0.001 0.001 0.024 0.017 0.558 0.005 0.174 0.039 12 G 0.011 0.005 0.037 0.008 0.002 0.086 0.015 0.001 0.004 0.008 0.026 0.021 0.684 0.010 0.004 0.079 13 E 0.060 0.095 0.040 0.033 0.001 0.007 0.002 0.006 0.001 0.001 0.194 0.064 0.482 0.001 0.009 0.006 14 S 0.001 0.004 0.003 0.004 0.001 0.301 0.001 0.001 0.001 0.002 0.007 0.227 0.441 0.002 0.001 0.005 15 F 0.001 0.001 0.002 0.001 0.001 0.020 0.001 0.001 0.001 0.001 0.224 0.013 0.738 0.001 0.001 0.001 16 D 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.427 0.551 0.001 0.001 0.001 17 K 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.991 0.002 0.001 0.001 18 L 0.001 0.001 0.014 0.001 0.001 0.001 0.013 0.001 0.001 0.001 0.002 0.002 0.921 0.021 0.005 0.021 19 L 0.001 0.002 0.017 0.002 0.001 0.001 0.023 0.001 0.001 0.001 0.001 0.003 0.894 0.015 0.016 0.024 20 S 0.005 0.005 0.073 0.012 0.001 0.002 0.024 0.003 0.001 0.001 0.002 0.002 0.584 0.058 0.024 0.204 21 H 0.005 0.002 0.012 0.001 0.001 0.128 0.009 0.001 0.001 0.002 0.010 0.004 0.785 0.003 0.016 0.018 22 R 0.002 0.003 0.004 0.001 0.001 0.004 0.006 0.001 0.001 0.001 0.773 0.008 0.174 0.020 0.001 0.004 23 D 0.002 0.007 0.001 0.001 0.001 0.002 0.001 0.002 0.001 0.001 0.011 0.870 0.078 0.001 0.024 0.001 24 G 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.024 0.015 0.917 0.001 0.001 0.036 25 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.064 0.925 0.001 0.001 0.001 26 E 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.031 0.964 0.001 0.001 0.001 27 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.991 0.001 0.001 0.001 28 F 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.998 0.001 0.001 0.001 29 T 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 30 R 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 31 F 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.954 0.010 0.002 0.029 32 L 0.001 0.001 0.006 0.001 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.962 0.004 0.011 0.007 33 K 0.001 0.004 0.021 0.004 0.001 0.003 0.007 0.001 0.001 0.001 0.002 0.001 0.872 0.013 0.010 0.060 34 T 0.016 0.008 0.021 0.010 0.001 0.017 0.029 0.001 0.001 0.001 0.019 0.011 0.784 0.025 0.015 0.041 35 E 0.019 0.075 0.120 0.018 0.002 0.019 0.022 0.004 0.002 0.001 0.045 0.027 0.483 0.026 0.036 0.101 36 F 0.015 0.094 0.163 0.073 0.001 0.019 0.013 0.004 0.003 0.002 0.018 0.092 0.407 0.004 0.025 0.068 37 S 0.006 0.002 0.013 0.002 0.001 0.400 0.001 0.001 0.001 0.002 0.026 0.022 0.518 0.001 0.001 0.004 38 E 0.001 0.003 0.001 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.725 0.043 0.213 0.001 0.001 0.001 39 E 0.001 0.004 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.009 0.829 0.153 0.001 0.001 0.001 40 N 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.007 0.987 0.001 0.001 0.001 41 I 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.016 0.980 0.001 0.001 0.001 42 E 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.005 0.991 0.001 0.001 0.001 43 F 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.994 0.001 0.001 0.001 44 W 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 45 I 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 46 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.987 0.002 0.001 0.008 47 C 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.002 0.001 0.982 0.008 0.004 0.001 48 E 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.005 0.971 0.004 0.008 0.004 49 D 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.005 0.864 0.045 0.006 0.071 50 F 0.003 0.001 0.047 0.001 0.001 0.001 0.027 0.001 0.001 0.001 0.002 0.002 0.864 0.009 0.025 0.017 51 K 0.002 0.008 0.059 0.005 0.001 0.006 0.026 0.002 0.001 0.001 0.007 0.007 0.799 0.014 0.013 0.052 52 K 0.046 0.024 0.048 0.044 0.005 0.022 0.031 0.006 0.007 0.002 0.021 0.028 0.525 0.076 0.021 0.096 53 S 0.016 0.031 0.086 0.016 0.031 0.039 0.241 0.004 0.003 0.002 0.033 0.016 0.249 0.151 0.028 0.053 54 K 0.013 0.182 0.284 0.062 0.001 0.006 0.013 0.063 0.003 0.001 0.018 0.020 0.106 0.003 0.175 0.050 55 G 0.031 0.012 0.055 0.047 0.006 0.313 0.017 0.004 0.031 0.125 0.022 0.065 0.200 0.005 0.004 0.062 56 P 0.072 0.051 0.040 0.017 0.001 0.065 0.003 0.008 0.001 0.001 0.515 0.032 0.187 0.001 0.004 0.004 57 Q 0.004 0.052 0.022 0.048 0.001 0.024 0.001 0.001 0.004 0.001 0.052 0.684 0.100 0.001 0.002 0.003 58 Q 0.013 0.011 0.063 0.082 0.001 0.028 0.003 0.001 0.001 0.001 0.033 0.117 0.635 0.001 0.002 0.007 59 I 0.001 0.003 0.020 0.016 0.001 0.053 0.001 0.001 0.001 0.001 0.065 0.032 0.806 0.001 0.001 0.001 60 H 0.001 0.005 0.003 0.007 0.001 0.021 0.002 0.001 0.001 0.001 0.030 0.072 0.856 0.001 0.001 0.001 61 L 0.001 0.002 0.001 0.005 0.001 0.003 0.001 0.001 0.001 0.001 0.011 0.037 0.939 0.001 0.001 0.001 62 K 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.003 0.015 0.971 0.001 0.001 0.004 63 A 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.007 0.006 0.983 0.001 0.001 0.001 64 K 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.015 0.978 0.001 0.001 0.001 65 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.996 0.001 0.001 0.001 66 I 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 67 Y 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 68 E 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.993 0.001 0.001 0.001 69 K 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.983 0.002 0.004 0.004 70 F 0.001 0.001 0.009 0.001 0.001 0.001 0.014 0.001 0.001 0.001 0.001 0.002 0.851 0.035 0.008 0.077 71 I 0.002 0.006 0.063 0.005 0.001 0.001 0.018 0.001 0.001 0.001 0.001 0.003 0.838 0.006 0.028 0.028 72 Q 0.006 0.004 0.049 0.007 0.010 0.031 0.144 0.002 0.001 0.002 0.005 0.003 0.395 0.253 0.010 0.081 73 T 0.020 0.034 0.037 0.013 0.003 0.040 0.027 0.067 0.001 0.001 0.167 0.009 0.275 0.018 0.266 0.022 74 D 0.009 0.272 0.062 0.023 0.001 0.004 0.006 0.003 0.056 0.006 0.016 0.044 0.046 0.009 0.015 0.427 75 A 0.447 0.012 0.178 0.050 0.003 0.064 0.048 0.001 0.004 0.003 0.008 0.037 0.108 0.004 0.010 0.023 76 P 0.019 0.144 0.605 0.034 0.001 0.070 0.014 0.004 0.001 0.001 0.027 0.008 0.049 0.001 0.005 0.016 77 K 0.021 0.172 0.072 0.575 0.001 0.021 0.004 0.004 0.009 0.002 0.037 0.042 0.020 0.002 0.003 0.014 78 E 0.036 0.027 0.369 0.491 0.004 0.013 0.012 0.001 0.006 0.001 0.002 0.007 0.014 0.002 0.001 0.013 79 V 0.010 0.011 0.305 0.649 0.001 0.005 0.003 0.001 0.001 0.001 0.002 0.001 0.005 0.001 0.001 0.004 80 N 0.006 0.014 0.064 0.750 0.014 0.132 0.002 0.001 0.002 0.002 0.002 0.002 0.004 0.001 0.001 0.005 81 L 0.009 0.063 0.026 0.806 0.008 0.044 0.001 0.005 0.001 0.001 0.029 0.002 0.004 0.001 0.001 0.001 82 D 0.001 0.019 0.004 0.040 0.010 0.871 0.001 0.003 0.002 0.005 0.007 0.032 0.004 0.001 0.001 0.001 83 F 0.001 0.014 0.002 0.009 0.001 0.021 0.001 0.005 0.001 0.001 0.924 0.005 0.015 0.001 0.001 0.001 84 H 0.001 0.027 0.004 0.008 0.001 0.011 0.001 0.001 0.003 0.001 0.021 0.899 0.019 0.001 0.001 0.001 85 T 0.004 0.003 0.018 0.008 0.001 0.048 0.002 0.002 0.001 0.001 0.050 0.091 0.766 0.001 0.005 0.002 86 K 0.001 0.006 0.010 0.005 0.001 0.015 0.001 0.001 0.001 0.001 0.089 0.048 0.820 0.001 0.001 0.003 87 E 0.001 0.004 0.001 0.008 0.001 0.004 0.001 0.001 0.001 0.001 0.011 0.088 0.882 0.001 0.001 0.001 88 V 0.001 0.001 0.005 0.009 0.001 0.003 0.002 0.001 0.001 0.001 0.003 0.012 0.954 0.002 0.001 0.008 89 I 0.001 0.001 0.006 0.004 0.001 0.006 0.004 0.001 0.001 0.001 0.003 0.005 0.964 0.002 0.002 0.002 90 T 0.001 0.005 0.007 0.007 0.001 0.009 0.011 0.001 0.001 0.001 0.006 0.007 0.908 0.022 0.008 0.008 91 N 0.002 0.006 0.008 0.018 0.001 0.006 0.004 0.003 0.001 0.001 0.013 0.010 0.842 0.009 0.053 0.025 92 S 0.011 0.008 0.026 0.009 0.001 0.007 0.012 0.001 0.003 0.001 0.008 0.017 0.681 0.030 0.012 0.173 93 I 0.029 0.012 0.079 0.016 0.005 0.024 0.102 0.002 0.001 0.001 0.024 0.016 0.586 0.058 0.017 0.029 94 T 0.009 0.209 0.286 0.072 0.002 0.005 0.027 0.020 0.003 0.001 0.007 0.019 0.158 0.017 0.083 0.082 95 Q 0.038 0.020 0.208 0.231 0.004 0.058 0.027 0.003 0.025 0.014 0.006 0.007 0.160 0.005 0.015 0.180 96 P 0.099 0.066 0.459 0.152 0.005 0.035 0.018 0.004 0.001 0.004 0.052 0.008 0.073 0.002 0.003 0.018 97 T 0.008 0.034 0.016 0.045 0.006 0.693 0.003 0.006 0.002 0.003 0.031 0.092 0.056 0.002 0.001 0.002 98 L 0.003 0.023 0.011 0.021 0.002 0.050 0.002 0.006 0.002 0.002 0.680 0.058 0.132 0.002 0.002 0.003 99 H 0.003 0.024 0.006 0.014 0.001 0.020 0.001 0.002 0.002 0.001 0.028 0.751 0.143 0.001 0.002 0.002 100 S 0.003 0.002 0.008 0.006 0.001 0.013 0.001 0.001 0.001 0.001 0.083 0.045 0.828 0.001 0.001 0.008 101 F 0.001 0.001 0.004 0.001 0.001 0.013 0.001 0.001 0.001 0.001 0.043 0.112 0.824 0.001 0.001 0.001 102 D 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.014 0.033 0.949 0.001 0.001 0.001 103 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.020 0.977 0.001 0.001 0.001 104 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.993 0.001 0.001 0.001 105 Q 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 106 S 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.996 0.001 0.001 0.001 107 R 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 108 V 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 109 Y 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 110 Q 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 111 L 0.001 0.001 0.005 0.002 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.940 0.009 0.007 0.028 112 M 0.002 0.003 0.040 0.011 0.001 0.003 0.022 0.001 0.001 0.001 0.001 0.002 0.832 0.020 0.018 0.044 113 E 0.005 0.005 0.032 0.007 0.007 0.039 0.047 0.003 0.001 0.001 0.007 0.004 0.699 0.092 0.018 0.035 114 Q 0.007 0.028 0.013 0.007 0.002 0.033 0.016 0.022 0.002 0.003 0.166 0.020 0.534 0.041 0.073 0.034 115 D 0.010 0.031 0.016 0.006 0.001 0.019 0.009 0.004 0.008 0.005 0.097 0.242 0.473 0.004 0.029 0.047 116 S 0.042 0.031 0.054 0.011 0.001 0.011 0.004 0.001 0.003 0.001 0.053 0.153 0.568 0.001 0.007 0.060 117 Y 0.015 0.009 0.107 0.014 0.001 0.039 0.004 0.001 0.001 0.001 0.031 0.121 0.647 0.001 0.002 0.008 118 T 0.001 0.003 0.010 0.004 0.001 0.076 0.003 0.001 0.001 0.001 0.061 0.045 0.794 0.001 0.001 0.001 119 R 0.001 0.024 0.001 0.006 0.001 0.010 0.001 0.001 0.001 0.001 0.080 0.103 0.773 0.001 0.001 0.001 120 F 0.001 0.005 0.002 0.006 0.001 0.003 0.008 0.001 0.001 0.001 0.002 0.168 0.793 0.002 0.001 0.009 121 L 0.001 0.002 0.031 0.004 0.001 0.002 0.006 0.001 0.001 0.001 0.002 0.005 0.934 0.001 0.004 0.008 122 K 0.001 0.007 0.032 0.012 0.001 0.006 0.004 0.001 0.001 0.001 0.004 0.007 0.886 0.005 0.004 0.028 123 S 0.001 0.001 0.002 0.001 0.001 0.088 0.001 0.001 0.001 0.001 0.014 0.010 0.877 0.001 0.002 0.001 124 D 0.001 0.003 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.372 0.022 0.595 0.001 0.001 0.002 125 I 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.004 0.431 0.560 0.001 0.001 0.001 126 Y 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.992 0.001 0.001 0.001 127 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.992 0.001 0.001 0.001 128 D 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.992 0.001 0.001 0.001 129 L 0.001 0.001 0.002 0.002 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.002 0.954 0.009 0.003 0.020 130 M 0.001 0.001 0.013 0.002 0.004 0.001 0.076 0.001 0.001 0.001 0.001 0.002 0.500 0.369 0.009 0.020 131 E 0.002 0.007 0.036 0.004 0.002 0.004 0.041 0.019 0.001 0.001 0.003 0.002 0.379 0.067 0.392 0.041 132 G 0.007 0.017 0.029 0.010 0.003 0.006 0.043 0.007 0.020 0.017 0.014 0.005 0.232 0.055 0.047 0.487