# TARGET T0302 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0302.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 342 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 S 0.204 0.134 0.262 0.258 0.064 0.020 0.027 0.016 0.011 0.005 0.001 2 M 0.084 0.266 0.401 0.034 0.095 0.019 0.040 0.007 0.041 0.012 0.001 3 V 0.053 0.071 0.818 0.022 0.006 0.021 0.001 0.001 0.003 0.001 0.003 4 S 0.011 0.113 0.779 0.001 0.049 0.012 0.001 0.001 0.026 0.007 0.001 5 P 0.915 0.002 0.070 0.005 0.001 0.002 0.001 0.001 0.001 0.001 0.004 6 E 0.968 0.002 0.019 0.005 0.001 0.001 0.001 0.002 0.001 0.001 0.001 7 E 0.971 0.001 0.014 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 8 A 0.964 0.004 0.014 0.013 0.001 0.003 0.001 0.001 0.001 0.001 0.001 9 V 0.956 0.011 0.008 0.020 0.002 0.002 0.001 0.001 0.001 0.001 0.001 10 K 0.784 0.033 0.031 0.129 0.011 0.003 0.004 0.001 0.004 0.001 0.001 11 W 0.530 0.031 0.154 0.222 0.014 0.010 0.017 0.005 0.015 0.001 0.001 12 G 0.399 0.020 0.062 0.092 0.024 0.006 0.045 0.293 0.005 0.053 0.001 13 E 0.174 0.184 0.475 0.065 0.045 0.040 0.008 0.001 0.007 0.002 0.001 14 S 0.064 0.142 0.631 0.008 0.069 0.048 0.001 0.001 0.032 0.004 0.001 15 F 0.994 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 16 D 0.992 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 17 K 0.985 0.001 0.001 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 18 L 0.905 0.001 0.004 0.088 0.001 0.001 0.001 0.001 0.001 0.001 0.001 19 L 0.697 0.025 0.111 0.141 0.006 0.009 0.006 0.001 0.004 0.001 0.001 20 S 0.242 0.020 0.088 0.592 0.009 0.022 0.012 0.007 0.006 0.002 0.001 21 H 0.015 0.074 0.661 0.017 0.016 0.096 0.004 0.001 0.115 0.002 0.001 22 R 0.971 0.001 0.004 0.021 0.001 0.001 0.001 0.001 0.001 0.001 0.001 23 D 0.918 0.001 0.006 0.071 0.001 0.001 0.002 0.001 0.001 0.001 0.001 24 G 0.929 0.001 0.003 0.047 0.001 0.001 0.002 0.010 0.001 0.004 0.001 25 L 0.991 0.001 0.003 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 26 E 0.994 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 27 A 0.996 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 28 F 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 29 T 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 30 R 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 31 F 0.985 0.001 0.001 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 32 L 0.956 0.001 0.004 0.036 0.001 0.001 0.001 0.001 0.001 0.001 0.001 33 K 0.926 0.003 0.012 0.051 0.001 0.003 0.004 0.001 0.001 0.001 0.001 34 T 0.764 0.045 0.035 0.133 0.012 0.004 0.002 0.001 0.003 0.001 0.001 35 E 0.756 0.040 0.062 0.105 0.009 0.010 0.007 0.003 0.007 0.001 0.001 36 F 0.449 0.081 0.086 0.237 0.037 0.024 0.029 0.008 0.040 0.007 0.001 37 S 0.737 0.024 0.105 0.050 0.027 0.017 0.012 0.008 0.006 0.014 0.001 38 E 0.918 0.005 0.012 0.051 0.004 0.003 0.002 0.003 0.001 0.002 0.001 39 E 0.909 0.013 0.020 0.045 0.005 0.003 0.002 0.001 0.001 0.001 0.001 40 N 0.907 0.012 0.012 0.052 0.002 0.006 0.005 0.001 0.002 0.001 0.001 41 I 0.937 0.030 0.017 0.006 0.002 0.005 0.001 0.001 0.002 0.001 0.001 42 E 0.987 0.005 0.003 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 43 F 0.987 0.005 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 44 W 0.986 0.006 0.003 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 45 I 0.977 0.005 0.002 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 46 A 0.948 0.007 0.011 0.026 0.002 0.004 0.001 0.001 0.001 0.001 0.001 47 C 0.964 0.002 0.003 0.026 0.001 0.002 0.001 0.001 0.001 0.001 0.001 48 E 0.991 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 49 D 0.957 0.001 0.001 0.037 0.001 0.001 0.001 0.001 0.001 0.001 0.001 50 F 0.787 0.006 0.009 0.192 0.001 0.002 0.002 0.001 0.001 0.001 0.001 51 K 0.918 0.010 0.030 0.027 0.001 0.005 0.007 0.001 0.002 0.001 0.001 52 K 0.715 0.020 0.025 0.211 0.004 0.008 0.007 0.004 0.006 0.001 0.001 53 S 0.329 0.106 0.343 0.136 0.014 0.041 0.012 0.002 0.016 0.001 0.001 54 K 0.215 0.114 0.126 0.474 0.023 0.019 0.012 0.002 0.014 0.001 0.001 55 G 0.032 0.038 0.379 0.008 0.125 0.012 0.013 0.016 0.034 0.343 0.001 56 P 0.934 0.001 0.037 0.017 0.001 0.003 0.001 0.001 0.001 0.002 0.003 57 Q 0.931 0.001 0.009 0.052 0.001 0.002 0.001 0.002 0.001 0.001 0.001 58 Q 0.934 0.004 0.007 0.047 0.001 0.002 0.002 0.001 0.002 0.001 0.001 59 I 0.946 0.005 0.011 0.027 0.001 0.004 0.002 0.001 0.001 0.001 0.001 60 H 0.981 0.002 0.008 0.005 0.001 0.002 0.001 0.001 0.001 0.001 0.001 61 L 0.990 0.001 0.002 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 62 K 0.992 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 63 A 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 64 K 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 65 A 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 66 I 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 67 Y 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 68 E 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 69 K 0.959 0.001 0.001 0.038 0.001 0.001 0.001 0.001 0.001 0.001 0.001 70 F 0.884 0.004 0.008 0.086 0.001 0.003 0.005 0.002 0.006 0.001 0.001 71 I 0.724 0.057 0.085 0.099 0.004 0.020 0.003 0.001 0.007 0.001 0.001 72 Q 0.333 0.139 0.259 0.124 0.052 0.041 0.016 0.003 0.025 0.007 0.001 73 T 0.717 0.017 0.157 0.089 0.008 0.005 0.002 0.001 0.002 0.002 0.001 74 D 0.157 0.008 0.030 0.574 0.007 0.016 0.091 0.100 0.015 0.002 0.001 75 A 0.032 0.111 0.712 0.006 0.026 0.019 0.015 0.002 0.068 0.009 0.001 76 P 0.185 0.009 0.519 0.040 0.001 0.019 0.002 0.001 0.001 0.001 0.224 77 K 0.036 0.538 0.257 0.019 0.082 0.014 0.010 0.002 0.039 0.001 0.001 78 E 0.031 0.143 0.716 0.005 0.003 0.072 0.002 0.001 0.018 0.001 0.011 79 V 0.124 0.600 0.121 0.055 0.024 0.043 0.001 0.001 0.033 0.001 0.001 80 N 0.020 0.186 0.230 0.040 0.043 0.290 0.075 0.002 0.112 0.001 0.001 81 L 0.133 0.321 0.258 0.188 0.038 0.036 0.003 0.001 0.020 0.001 0.001 82 D 0.055 0.121 0.611 0.018 0.042 0.099 0.006 0.001 0.037 0.008 0.001 83 F 0.935 0.003 0.007 0.041 0.001 0.002 0.004 0.005 0.001 0.001 0.001 84 H 0.934 0.005 0.010 0.044 0.001 0.002 0.002 0.001 0.001 0.001 0.001 85 T 0.902 0.017 0.020 0.052 0.002 0.003 0.001 0.001 0.002 0.001 0.001 86 K 0.956 0.011 0.018 0.007 0.001 0.002 0.003 0.001 0.001 0.001 0.001 87 E 0.969 0.009 0.011 0.005 0.001 0.002 0.001 0.001 0.001 0.001 0.001 88 V 0.976 0.009 0.005 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 89 I 0.939 0.017 0.009 0.026 0.001 0.004 0.001 0.001 0.004 0.001 0.001 90 T 0.901 0.030 0.017 0.037 0.003 0.004 0.003 0.001 0.003 0.001 0.001 91 N 0.834 0.018 0.030 0.066 0.017 0.004 0.023 0.005 0.002 0.001 0.001 92 S 0.441 0.035 0.038 0.411 0.013 0.016 0.026 0.007 0.012 0.001 0.001 93 I 0.364 0.172 0.270 0.088 0.020 0.050 0.013 0.002 0.019 0.001 0.001 94 T 0.441 0.079 0.066 0.364 0.009 0.019 0.008 0.001 0.010 0.002 0.001 95 Q 0.045 0.243 0.367 0.006 0.083 0.014 0.038 0.001 0.199 0.004 0.001 96 P 0.197 0.005 0.677 0.014 0.001 0.022 0.001 0.001 0.001 0.001 0.084 97 T 0.058 0.227 0.436 0.029 0.078 0.095 0.007 0.004 0.063 0.003 0.001 98 L 0.808 0.045 0.055 0.058 0.007 0.015 0.004 0.002 0.004 0.002 0.001 99 H 0.770 0.028 0.037 0.132 0.009 0.008 0.006 0.003 0.005 0.001 0.001 100 S 0.682 0.056 0.063 0.126 0.027 0.019 0.007 0.002 0.013 0.003 0.001 101 F 0.956 0.004 0.012 0.016 0.001 0.006 0.002 0.001 0.002 0.001 0.001 102 D 0.989 0.001 0.002 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 103 A 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 104 A 0.995 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 105 Q 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 106 S 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 107 R 0.996 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 108 V 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 109 Y 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 110 Q 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 111 L 0.979 0.001 0.001 0.021 0.001 0.001 0.001 0.001 0.001 0.001 0.001 112 M 0.913 0.001 0.004 0.076 0.001 0.001 0.002 0.001 0.001 0.001 0.001 113 E 0.902 0.004 0.026 0.052 0.001 0.007 0.006 0.001 0.001 0.001 0.001 114 Q 0.687 0.025 0.058 0.195 0.009 0.011 0.007 0.004 0.003 0.001 0.001 115 D 0.299 0.068 0.181 0.247 0.034 0.069 0.057 0.007 0.036 0.002 0.001 116 S 0.590 0.066 0.082 0.160 0.032 0.018 0.021 0.016 0.010 0.005 0.001 117 Y 0.692 0.066 0.076 0.093 0.018 0.024 0.011 0.004 0.012 0.003 0.001 118 T 0.851 0.020 0.044 0.066 0.004 0.008 0.002 0.001 0.003 0.001 0.001 119 R 0.881 0.013 0.030 0.053 0.005 0.006 0.009 0.002 0.002 0.001 0.001 120 F 0.779 0.026 0.038 0.106 0.005 0.018 0.014 0.002 0.011 0.001 0.001 121 L 0.581 0.078 0.193 0.104 0.008 0.021 0.008 0.002 0.004 0.001 0.001 122 K 0.395 0.108 0.151 0.228 0.046 0.028 0.018 0.006 0.012 0.008 0.001 123 S 0.325 0.094 0.419 0.025 0.083 0.019 0.003 0.002 0.019 0.010 0.001 124 D 0.982 0.001 0.002 0.011 0.001 0.001 0.001 0.002 0.001 0.001 0.001 125 I 0.990 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 126 Y 0.989 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 127 L 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 128 D 0.994 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 129 L 0.948 0.001 0.001 0.049 0.001 0.001 0.001 0.001 0.001 0.001 0.001 130 M 0.845 0.009 0.022 0.117 0.001 0.002 0.001 0.001 0.002 0.001 0.001 131 E 0.369 0.015 0.058 0.471 0.006 0.008 0.050 0.012 0.006 0.004 0.001 132 G 0.172 0.033 0.256 0.050 0.067 0.008 0.064 0.200 0.007 0.143 0.001