# TARGET T0302 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0302.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 386 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 S 0.014 0.004 0.010 0.037 0.156 0.780 2 M 0.024 0.010 0.004 0.012 0.146 0.804 3 V 0.026 0.023 0.003 0.009 0.116 0.823 4 S 0.019 0.015 0.002 0.007 0.157 0.801 5 P 0.009 0.003 0.102 0.386 0.262 0.239 6 E 0.014 0.001 0.141 0.563 0.192 0.089 7 E 0.029 0.005 0.192 0.543 0.182 0.049 8 A 0.082 0.017 0.113 0.489 0.164 0.135 9 V 0.068 0.014 0.058 0.594 0.127 0.140 10 K 0.086 0.016 0.065 0.468 0.159 0.205 11 W 0.057 0.006 0.045 0.304 0.226 0.362 12 G 0.058 0.013 0.028 0.174 0.252 0.475 13 E 0.052 0.037 0.018 0.232 0.205 0.456 14 S 0.025 0.037 0.012 0.208 0.118 0.599 15 F 0.001 0.001 0.031 0.953 0.010 0.006 16 D 0.001 0.001 0.040 0.949 0.008 0.002 17 K 0.001 0.001 0.034 0.951 0.012 0.002 18 L 0.001 0.001 0.017 0.960 0.017 0.005 19 L 0.001 0.002 0.015 0.904 0.056 0.023 20 S 0.002 0.004 0.008 0.711 0.119 0.156 21 H 0.002 0.001 0.003 0.081 0.145 0.768 22 R 0.001 0.001 0.015 0.931 0.037 0.016 23 D 0.001 0.001 0.034 0.875 0.069 0.020 24 G 0.001 0.001 0.013 0.966 0.014 0.006 25 L 0.001 0.001 0.002 0.990 0.003 0.004 26 E 0.001 0.001 0.001 0.996 0.001 0.001 27 A 0.001 0.001 0.001 0.997 0.001 0.001 28 F 0.001 0.001 0.001 0.997 0.001 0.001 29 T 0.001 0.001 0.001 0.997 0.001 0.001 30 R 0.001 0.001 0.002 0.993 0.003 0.001 31 F 0.001 0.001 0.003 0.984 0.006 0.007 32 L 0.001 0.001 0.004 0.973 0.008 0.013 33 K 0.001 0.001 0.007 0.955 0.018 0.018 34 T 0.001 0.001 0.011 0.860 0.062 0.065 35 E 0.002 0.002 0.017 0.601 0.173 0.206 36 F 0.003 0.006 0.022 0.360 0.253 0.355 37 S 0.004 0.002 0.027 0.217 0.250 0.499 38 E 0.001 0.001 0.141 0.800 0.045 0.013 39 E 0.001 0.001 0.134 0.815 0.040 0.010 40 N 0.002 0.001 0.083 0.868 0.034 0.013 41 I 0.009 0.001 0.012 0.935 0.027 0.016 42 E 0.017 0.001 0.009 0.937 0.022 0.015 43 F 0.053 0.001 0.016 0.904 0.021 0.006 44 W 0.076 0.001 0.010 0.888 0.020 0.005 45 I 0.058 0.001 0.012 0.893 0.026 0.009 46 A 0.055 0.002 0.013 0.839 0.040 0.051 47 C 0.003 0.001 0.027 0.885 0.025 0.059 48 E 0.001 0.001 0.136 0.839 0.018 0.007 49 D 0.001 0.001 0.133 0.824 0.034 0.007 50 F 0.001 0.002 0.064 0.884 0.037 0.012 51 K 0.001 0.007 0.029 0.881 0.049 0.034 52 K 0.002 0.003 0.029 0.762 0.135 0.070 53 S 0.003 0.006 0.017 0.368 0.322 0.283 54 K 0.003 0.006 0.007 0.186 0.247 0.551 55 G 0.001 0.001 0.001 0.009 0.137 0.851 56 P 0.001 0.001 0.017 0.876 0.052 0.054 57 Q 0.001 0.001 0.017 0.938 0.030 0.014 58 Q 0.001 0.001 0.014 0.963 0.017 0.005 59 I 0.001 0.001 0.004 0.985 0.005 0.004 60 H 0.001 0.001 0.002 0.990 0.003 0.004 61 L 0.001 0.001 0.002 0.992 0.003 0.002 62 K 0.001 0.001 0.003 0.990 0.003 0.003 63 A 0.001 0.001 0.001 0.994 0.002 0.001 64 K 0.001 0.001 0.002 0.992 0.004 0.001 65 A 0.001 0.001 0.002 0.989 0.005 0.003 66 I 0.001 0.001 0.003 0.980 0.009 0.006 67 Y 0.001 0.001 0.004 0.984 0.006 0.004 68 E 0.001 0.001 0.016 0.969 0.010 0.004 69 K 0.002 0.001 0.018 0.932 0.024 0.024 70 F 0.006 0.005 0.031 0.841 0.036 0.081 71 I 0.023 0.036 0.020 0.590 0.100 0.231 72 Q 0.017 0.010 0.020 0.227 0.576 0.149 73 T 0.007 0.004 0.024 0.118 0.724 0.123 74 D 0.004 0.003 0.018 0.026 0.809 0.141 75 A 0.020 0.023 0.018 0.006 0.785 0.148 76 P 0.033 0.014 0.027 0.012 0.385 0.529 77 K 0.112 0.020 0.044 0.017 0.356 0.451 78 E 0.267 0.024 0.044 0.023 0.287 0.356 79 V 0.367 0.048 0.019 0.026 0.149 0.391 80 N 0.223 0.034 0.008 0.017 0.189 0.529 81 L 0.045 0.012 0.003 0.025 0.128 0.787 82 D 0.020 0.004 0.002 0.043 0.118 0.812 83 F 0.001 0.001 0.017 0.916 0.043 0.023 84 H 0.002 0.001 0.020 0.922 0.039 0.016 85 T 0.001 0.001 0.008 0.973 0.011 0.006 86 K 0.001 0.001 0.003 0.989 0.003 0.004 87 E 0.001 0.001 0.003 0.989 0.004 0.003 88 V 0.001 0.001 0.005 0.984 0.007 0.003 89 I 0.001 0.001 0.004 0.983 0.008 0.003 90 T 0.001 0.001 0.008 0.976 0.011 0.003 91 N 0.001 0.001 0.012 0.946 0.026 0.014 92 S 0.002 0.001 0.017 0.784 0.077 0.120 93 I 0.003 0.009 0.031 0.510 0.199 0.248 94 T 0.007 0.005 0.026 0.158 0.342 0.462 95 Q 0.007 0.008 0.025 0.108 0.341 0.511 96 P 0.007 0.015 0.018 0.131 0.262 0.566 97 T 0.008 0.013 0.021 0.186 0.238 0.533 98 L 0.002 0.001 0.144 0.655 0.120 0.076 99 H 0.003 0.002 0.178 0.646 0.117 0.054 100 S 0.006 0.003 0.122 0.740 0.088 0.041 101 F 0.004 0.002 0.018 0.899 0.035 0.042 102 D 0.001 0.001 0.010 0.968 0.014 0.008 103 A 0.001 0.001 0.010 0.979 0.008 0.003 104 A 0.001 0.001 0.006 0.987 0.005 0.002 105 Q 0.001 0.001 0.003 0.993 0.003 0.002 106 S 0.001 0.001 0.002 0.992 0.003 0.002 107 R 0.001 0.001 0.002 0.991 0.005 0.002 108 V 0.001 0.001 0.002 0.990 0.006 0.002 109 Y 0.001 0.001 0.003 0.992 0.003 0.001 110 Q 0.001 0.001 0.004 0.989 0.005 0.002 111 L 0.001 0.001 0.005 0.979 0.007 0.009 112 M 0.001 0.001 0.006 0.970 0.011 0.012 113 E 0.001 0.001 0.007 0.943 0.025 0.022 114 Q 0.001 0.001 0.011 0.870 0.052 0.065 115 D 0.002 0.002 0.021 0.457 0.226 0.293 116 S 0.003 0.003 0.037 0.499 0.245 0.212 117 Y 0.013 0.007 0.067 0.530 0.242 0.142 118 T 0.009 0.002 0.079 0.690 0.139 0.081 119 R 0.020 0.004 0.118 0.701 0.100 0.057 120 F 0.020 0.006 0.089 0.786 0.062 0.038 121 L 0.035 0.008 0.050 0.712 0.101 0.094 122 K 0.020 0.005 0.018 0.711 0.077 0.169 123 S 0.012 0.002 0.005 0.473 0.092 0.416 124 D 0.001 0.001 0.005 0.965 0.014 0.014 125 I 0.002 0.001 0.011 0.963 0.018 0.005 126 Y 0.002 0.001 0.006 0.981 0.008 0.002 127 L 0.001 0.001 0.006 0.987 0.004 0.002 128 D 0.001 0.001 0.007 0.980 0.006 0.004 129 L 0.001 0.001 0.008 0.957 0.012 0.021 130 M 0.001 0.002 0.008 0.907 0.025 0.057 131 E 0.001 0.003 0.005 0.806 0.040 0.144 132 G 0.001 0.001 0.001 0.019 0.047 0.933