# List of top-scoring protein chains for T0302.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2af0A 146 8.21e-22 1eztA 166 1.15e-21 1agrE a.91.1.1 18541 1agrE 205 1.30e-21 1agrE a.91.1.1 18538 2crpA 150 3.04e-21 2bv1A 145 3.25e-21 1cmzA 152 4.49e-21 1agrE a.91.1.1 18547 1zv4X 158 1.17e-20 2bt2A 161 1.34e-20 2a72A 146 5.32e-20 1fqiA 147 1.08e-19 1agrE a.91.1.1 18542 2es0A 148 1.58e-19 1dk8A 147 2.66e-16 1agrE a.91.1.1 18548 1emuA 132 6.06e-16 1agrE a.91.1.1 18549 1omwA 689 6.04e-12 a.91.1.1,b.55.1.1,d.144.1.7 87086,87087,87088 1htjF 210 6.81e-05 1htjF a.91.1.1 61254 2acxA 576 2.42e-02 1bf5A 575 3.70e-01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 1yvlA 683 6.88e-01 1eljA 381 8.59e-01 4mbp c.94.1.1 35791 1y3nA 490 1.61e+00 1b64 91 2.78e+00 1b64 d.58.12.1 39306 1r5vB 185 2.84e+00 b.1.1.2,d.19.1.1 97118,97119 1kt2B 213 3.05e+00 b.1.1.2,d.19.1.1 72953,72954 1fngB 224 3.29e+00 1iakB b.1.1.2,d.19.1.1 59906,59907 1iebB 227 3.31e+00 1iakB b.1.1.2,d.19.1.1 21636,38210 1ktdB 215 3.32e+00 b.1.1.2,d.19.1.1 72966,72967 1fneB 224 3.45e+00 1iakB b.1.1.2,d.19.1.1 59898,59899 1ieaB 228 3.55e+00 1iakB b.1.1.2,d.19.1.1 21632,38206 2a0mA 316 4.73e+00 1ijeB 90 5.23e+00 1b64 d.58.12.1 62488 2b7cB 94 5.36e+00 1f60B 94 5.42e+00 1b64 d.58.12.1 39307 1lk3A 160 6.26e+00 a.26.1.3 73950 1ilk 151 6.81e+00 2ilk a.26.1.3 16886 2ilk 160 7.11e+00 2ilk a.26.1.3 16885 1ckmA 330 7.93e+00 1ckmA b.40.4.6,d.142.2.3 25358,41585 1shzC 233 8.41e+00 1cknB 330 9.05e+00 1ckmA b.40.4.6,d.142.2.3 25361,41588 1vjgA 218 1.01e+01 c.23.10.6 100810 1mnaA 298 1.10e+01 c.69.1.22 79322 2ce7A 476 1.11e+01 1jv1A 505 1.26e+01 c.68.1.5 71892 1bco 327 1.28e+01 1bco b.48.1.1,c.55.3.3 26431,33676 1a0cA 438 1.31e+01 1a0cA c.1.15.3 29529 1qdlA 422 1.32e+01 1qdlA d.161.1.1 42088 1iapA 211 1.47e+01 a.91.1.1 62119 1abbA 828 1.52e+01 1a8i c.87.1.4 35536 1h5uA 842 1.53e+01 1a8i c.87.1.4 60655 1c50A 830 1.53e+01 1a8i c.87.1.4 35512 1noj 842 1.53e+01 1a8i c.87.1.4 35479 1xc7A 842 1.58e+01 1zpdA 568 1.58e+01 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 2etrA 415 1.71e+01 1jvgA 522 1.78e+01 c.68.1.5 77185 1a06 332 1.84e+01 1tkiA d.144.1.7 41634 1r1rA 761 1.89e+01 1rlr a.98.1.1,c.7.1.2 18754,30680 2bmiA 232 2.18e+01 1a7tA d.157.1.1 42043 1y6nL 145 2.33e+01 1hlkA 227 2.35e+01 d.157.1.1 65848 1a7tA 232 2.38e+01 1a7tA d.157.1.1 42041 1vzoA 355 2.40e+01 d.144.1.7 108971 1xszA 356 2.47e+01 1vlk 145 2.47e+01 2ilk a.26.1.3 16888 1qxmA 300 2.49e+01 b.42.2.1,b.42.2.1 96533,96534 4znbA 232 2.50e+01 1a7tA d.157.1.1 42047 1kobA 387 2.58e+01 1tkiA d.144.1.7 41640 1znbA 232 2.63e+01 1a7tA d.157.1.1 42039 1a0dA 440 2.72e+01 1a0cA c.1.15.3 29533 1rlr 761 2.74e+01 1rlr a.98.1.1,c.7.1.2 18753,30679 1tetL 216 2.75e+01 32c2A b.1.1.1,b.1.1.2 19902,20996 6r1rA 761 2.80e+01 1rlr a.98.1.1,c.7.1.2 18760,30686 4r1rA 761 2.82e+01 1rlr a.98.1.1,c.7.1.2 18772,30698 2r1rA 761 2.83e+01 1rlr a.98.1.1,c.7.1.2 18769,30695 5r1rA 761 2.83e+01 1rlr a.98.1.1,c.7.1.2 18757,30683 1zeaL 216 2.83e+01 7r1rA 761 2.84e+01 1rlr a.98.1.1,c.7.1.2 18763,30689 1z0hA 438 3.01e+01 2g5dA 422 3.07e+01 1ft9A 222 3.08e+01 1ft9A a.4.5.4,b.82.3.1 16107,28131 2azkA 289 3.09e+01 2asdA 360 3.10e+01 2b4sB 306 3.11e+01 1xx4A 261 3.12e+01 2cfvA 316 3.13e+01 1ir3A 306 3.22e+01 1fmk d.144.1.7 41702 1p14A 306 3.27e+01 d.144.1.7 87660 1z8dA 842 3.40e+01 1irk 306 3.53e+01 1fmk d.144.1.7 41703 2azjA 289 3.55e+01 1i44A 306 3.69e+01 1fmk d.144.1.7 61664 1y4wA 518 3.73e+01 1z34A 235 3.77e+01 1f2dA 341 3.89e+01 1f2dA c.79.1.1 35298 2boaA 404 3.89e+01 1f8hA 95 4.01e+01 1eh2 a.39.1.6 17336 1j0dA 341 4.16e+01 c.79.1.1 83902 1at3A 247 4.19e+01 1at3A b.57.1.1 27021 1clzL 219 4.23e+01 8fabA b.1.1.1,b.1.1.2 20104,21136 1geqA 248 4.35e+01 2tysA c.1.2.4 28589 1z5xU 262 4.38e+01 1eh2 106 4.40e+01 1eh2 a.39.1.6 17339 1ev4A 221 4.62e+01 1pgtA a.45.1.1,c.47.1.5 17693,32987 1rk4A 243 4.63e+01 a.45.1.1,c.47.1.5 97592,97593 1ev9A 221 4.64e+01 1pgtA a.45.1.1,c.47.1.5 17696,32990 1xjjA 644 4.72e+01 1qtoA 122 4.80e+01 1bylA d.32.1.2 38494 1g0yR 312 4.80e+01 1itbB b.1.1.4,b.1.1.4,b.1.1.4 21723,21724,21725 1iraY 319 4.86e+01 1itbB b.1.1.4,b.1.1.4,b.1.1.4 21717,21718,21719 1j0eA 341 4.86e+01 c.79.1.1 83906 1itbB 315 4.91e+01 1itbB b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 1j1nA 492 4.97e+01 c.94.1.1 83978 1z81A 229 4.97e+01 2btmA 252 5.07e+01 1amk c.1.1.1 28511 1ve6A 582 5.21e+01 1gseA 221 5.32e+01 1pgtA a.45.1.1,c.47.1.5 17667,32961 1btmA 252 5.40e+01 1amk c.1.1.1 28513 2b3yA 888 5.47e+01 1pvtA 238 5.63e+01 c.74.1.1 95189 1k3yA 221 5.69e+01 a.45.1.1,c.47.1.5 77245,77246 1pl1A 222 5.69e+01 a.45.1.1,c.47.1.5 104178,104179 1zjrA 211 5.84e+01 1xwgA 221 5.89e+01 1lopA 164 5.90e+01 2cpl b.62.1.1 27510 1pl2A 222 5.90e+01 a.45.1.1,c.47.1.5 104182,104183 1ucbL 219 6.02e+01 32c2A b.1.1.1,b.1.1.2 20100,21132 1pig 496 6.13e+01 1smd b.71.1.1,c.1.8.1 27764,28751 1ydkA 222 6.31e+01 1vs1A 276 6.40e+01 1agsA 221 6.45e+01 1pgtA a.45.1.1,c.47.1.5 17691,32985 1bx2B 191 6.51e+01 1iakB b.1.1.2,d.19.1.1 21610,38184 1usbA 225 6.51e+01 a.45.1.1,c.47.1.5 108001,108002 1bvnP 496 6.55e+01 1smd b.71.1.1,c.1.8.1 27767,28754 1imuA 107 6.59e+01 d.204.1.1 66218 1z1lA 345 6.64e+01 1ymmB 198 6.68e+01 1p32A 209 6.74e+01 1p32A d.25.1.1 38379 1cc1S 283 6.86e+01 2frvA e.19.1.1 43313 1dhkA 496 7.06e+01 1smd b.71.1.1,c.1.8.1 27761,28748 1stzA 338 7.11e+01 a.4.5.51,d.110.2.3 106009,106010 1ose 496 7.15e+01 1smd b.71.1.1,c.1.8.1 27766,28753 1qo7A 394 7.25e+01 1qo7A c.69.1.11 34697 2nul 164 7.34e+01 2cpl b.62.1.1 27511 1ebpA 211 7.47e+01 1eerB b.1.2.1,b.1.2.1 22023,22024 1vahA 496 7.50e+01 1hx0A 496 7.50e+01 b.71.1.1,c.1.8.1 61346,61347 2f7fA 494 7.51e+01 1jfh 496 7.51e+01 1smd b.71.1.1,c.1.8.1 27762,28749 1ernA 213 7.52e+01 1eerB b.1.2.1,b.1.2.1 22019,22020 1ppi 496 7.53e+01 1smd b.71.1.1,c.1.8.1 27763,28750 1kxqA 496 7.59e+01 b.71.1.1,c.1.8.1 73163,73164 1j8bA 112 7.61e+01 d.222.1.1 77101 1ebaA 215 7.74e+01 1eerB b.1.2.1,b.1.2.1 22015,22016 2aeuA 374 7.93e+01 1sacA 204 7.95e+01 1sacA b.29.1.5 24237 1ybhA 590 8.05e+01 2c07A 285 8.06e+01 1un0A 443 8.08e+01 a.118.1.1 99641 2c1tA 454 8.10e+01 1tdiA 222 8.11e+01 1x3kA 152 8.23e+01 1v8kA 410 8.24e+01 c.37.1.9 100510 1qexA 288 8.24e+01 1qexA b.32.1.1 24425 1nakL 219 8.24e+01 b.1.1.1,b.1.1.2 91757,91758 2cb5A 453 8.32e+01 3gcb d.3.1.1 37035 1qkzL 217 8.38e+01 8fabA b.1.1.1,b.1.1.2 20136,21166 1bg1A 596 8.44e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17767,22461,40527 1ty0A 211 8.47e+01 b.40.2.2,d.15.6.1 107440,107441 1wljA 189 8.52e+01 2agqA 341 8.77e+01 1a6aB 187 8.77e+01 1iakB b.1.1.2,d.19.1.1 21616,38190 1z83A 196 8.88e+01 1cn4A 228 8.90e+01 1eerB b.1.2.1,b.1.2.1 22027,22028