# TARGET T0302 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0302.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 386 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 S 0.001 0.003 0.946 0.002 0.001 0.001 0.001 0.001 0.001 0.024 0.005 0.001 0.014 2 M 0.001 0.013 0.896 0.001 0.001 0.002 0.001 0.001 0.003 0.038 0.007 0.030 0.008 3 V 0.001 0.037 0.838 0.001 0.001 0.004 0.001 0.001 0.005 0.076 0.009 0.006 0.025 4 S 0.001 0.013 0.930 0.001 0.001 0.003 0.001 0.001 0.002 0.037 0.002 0.003 0.009 5 P 0.001 0.004 0.192 0.001 0.040 0.623 0.001 0.001 0.001 0.071 0.062 0.001 0.006 6 E 0.001 0.001 0.048 0.001 0.084 0.787 0.001 0.001 0.001 0.024 0.051 0.003 0.002 7 E 0.001 0.003 0.024 0.001 0.096 0.839 0.001 0.001 0.001 0.008 0.022 0.001 0.005 8 A 0.001 0.004 0.042 0.001 0.046 0.870 0.001 0.001 0.001 0.012 0.016 0.001 0.006 9 V 0.001 0.010 0.051 0.003 0.028 0.821 0.001 0.001 0.010 0.018 0.046 0.003 0.007 10 K 0.001 0.008 0.078 0.001 0.035 0.591 0.001 0.001 0.005 0.051 0.217 0.003 0.008 11 W 0.001 0.005 0.151 0.001 0.023 0.245 0.001 0.001 0.001 0.107 0.460 0.001 0.005 12 G 0.001 0.008 0.389 0.001 0.019 0.078 0.001 0.001 0.001 0.152 0.348 0.002 0.002 13 E 0.001 0.014 0.386 0.001 0.010 0.049 0.001 0.001 0.001 0.457 0.074 0.005 0.004 14 S 0.001 0.052 0.620 0.001 0.007 0.109 0.001 0.001 0.004 0.136 0.024 0.003 0.044 15 F 0.001 0.002 0.010 0.001 0.022 0.941 0.001 0.001 0.001 0.006 0.018 0.001 0.001 16 D 0.001 0.001 0.001 0.001 0.035 0.954 0.001 0.001 0.001 0.001 0.008 0.001 0.001 17 K 0.001 0.001 0.001 0.001 0.056 0.933 0.001 0.001 0.001 0.001 0.008 0.001 0.001 18 L 0.001 0.001 0.003 0.001 0.075 0.901 0.001 0.001 0.001 0.003 0.017 0.001 0.001 19 L 0.001 0.004 0.008 0.001 0.041 0.796 0.001 0.001 0.002 0.006 0.142 0.001 0.001 20 S 0.001 0.007 0.031 0.001 0.018 0.440 0.001 0.001 0.001 0.043 0.459 0.001 0.001 21 H 0.001 0.001 0.543 0.001 0.001 0.045 0.001 0.001 0.001 0.399 0.010 0.001 0.001 22 R 0.001 0.001 0.019 0.001 0.037 0.724 0.001 0.001 0.001 0.032 0.188 0.001 0.001 23 D 0.001 0.002 0.013 0.001 0.037 0.739 0.001 0.001 0.001 0.022 0.187 0.001 0.001 24 G 0.001 0.002 0.030 0.001 0.028 0.900 0.001 0.001 0.001 0.017 0.022 0.001 0.001 25 L 0.001 0.001 0.004 0.001 0.003 0.988 0.001 0.001 0.001 0.001 0.004 0.001 0.001 26 E 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.003 0.001 0.001 27 A 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.003 0.001 0.001 28 F 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 29 T 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 30 R 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.003 0.001 0.001 31 F 0.001 0.001 0.001 0.001 0.001 0.985 0.001 0.001 0.001 0.001 0.012 0.001 0.001 32 L 0.001 0.001 0.006 0.001 0.004 0.925 0.001 0.001 0.001 0.006 0.059 0.001 0.001 33 K 0.001 0.001 0.020 0.001 0.015 0.718 0.001 0.001 0.001 0.018 0.228 0.001 0.001 34 T 0.001 0.001 0.046 0.001 0.024 0.536 0.001 0.001 0.001 0.074 0.318 0.001 0.001 35 E 0.001 0.003 0.105 0.001 0.037 0.438 0.001 0.001 0.001 0.109 0.306 0.001 0.001 36 F 0.001 0.010 0.215 0.001 0.027 0.389 0.001 0.001 0.001 0.131 0.225 0.001 0.002 37 S 0.001 0.005 0.286 0.001 0.021 0.533 0.001 0.001 0.001 0.074 0.076 0.001 0.004 38 E 0.001 0.001 0.023 0.001 0.022 0.902 0.001 0.001 0.001 0.017 0.035 0.001 0.001 39 E 0.001 0.001 0.012 0.001 0.021 0.918 0.001 0.001 0.001 0.011 0.037 0.001 0.001 40 N 0.001 0.001 0.016 0.001 0.010 0.942 0.001 0.001 0.001 0.009 0.020 0.001 0.001 41 I 0.001 0.001 0.005 0.001 0.001 0.988 0.001 0.001 0.001 0.002 0.003 0.001 0.001 42 E 0.001 0.001 0.004 0.001 0.001 0.987 0.001 0.001 0.001 0.001 0.003 0.001 0.001 43 F 0.001 0.001 0.002 0.001 0.001 0.991 0.001 0.001 0.001 0.001 0.002 0.001 0.001 44 W 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 45 I 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 46 A 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.003 0.001 0.001 47 C 0.001 0.001 0.003 0.001 0.002 0.987 0.001 0.001 0.001 0.001 0.005 0.001 0.001 48 E 0.001 0.001 0.003 0.001 0.016 0.954 0.001 0.001 0.001 0.002 0.021 0.001 0.001 49 D 0.001 0.001 0.009 0.001 0.032 0.839 0.001 0.001 0.001 0.012 0.105 0.001 0.002 50 F 0.001 0.001 0.048 0.001 0.081 0.696 0.001 0.001 0.001 0.024 0.145 0.001 0.003 51 K 0.001 0.014 0.158 0.001 0.059 0.516 0.001 0.001 0.002 0.060 0.183 0.004 0.004 52 K 0.001 0.007 0.188 0.001 0.062 0.278 0.001 0.001 0.001 0.121 0.325 0.004 0.013 53 S 0.001 0.008 0.408 0.001 0.031 0.129 0.001 0.001 0.002 0.175 0.232 0.004 0.009 54 K 0.001 0.027 0.458 0.001 0.006 0.057 0.001 0.001 0.001 0.374 0.069 0.004 0.004 55 G 0.001 0.005 0.868 0.001 0.001 0.014 0.001 0.001 0.001 0.106 0.005 0.001 0.002 56 P 0.001 0.001 0.034 0.001 0.034 0.816 0.001 0.001 0.001 0.021 0.095 0.001 0.001 57 Q 0.001 0.001 0.006 0.001 0.012 0.943 0.001 0.001 0.001 0.006 0.031 0.001 0.001 58 Q 0.001 0.001 0.008 0.001 0.017 0.960 0.001 0.001 0.001 0.005 0.009 0.001 0.001 59 I 0.001 0.001 0.020 0.001 0.005 0.963 0.001 0.001 0.001 0.004 0.006 0.001 0.001 60 H 0.001 0.001 0.009 0.001 0.001 0.981 0.001 0.001 0.001 0.002 0.006 0.001 0.001 61 L 0.001 0.001 0.003 0.001 0.001 0.991 0.001 0.001 0.001 0.002 0.003 0.001 0.001 62 K 0.001 0.001 0.003 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.002 0.001 0.001 63 A 0.001 0.001 0.002 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.001 0.001 0.001 64 K 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 65 A 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.003 0.001 0.001 66 I 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.005 0.001 0.001 67 Y 0.001 0.001 0.002 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.004 0.001 0.001 68 E 0.001 0.001 0.001 0.001 0.012 0.973 0.001 0.001 0.001 0.001 0.013 0.001 0.001 69 K 0.001 0.001 0.001 0.001 0.019 0.935 0.001 0.001 0.001 0.004 0.040 0.001 0.001 70 F 0.001 0.001 0.008 0.001 0.036 0.833 0.001 0.001 0.001 0.008 0.112 0.001 0.001 71 I 0.001 0.033 0.187 0.001 0.019 0.493 0.001 0.006 0.019 0.099 0.130 0.003 0.008 72 Q 0.001 0.012 0.713 0.006 0.014 0.047 0.001 0.001 0.007 0.137 0.053 0.006 0.004 73 T 0.001 0.002 0.056 0.002 0.033 0.019 0.001 0.001 0.001 0.122 0.763 0.001 0.001 74 D 0.001 0.002 0.067 0.002 0.017 0.002 0.001 0.001 0.001 0.062 0.845 0.001 0.001 75 A 0.001 0.013 0.742 0.002 0.010 0.002 0.001 0.001 0.007 0.171 0.033 0.012 0.007 76 P 0.001 0.027 0.660 0.007 0.015 0.005 0.001 0.001 0.026 0.122 0.056 0.003 0.077 77 K 0.002 0.012 0.447 0.003 0.016 0.009 0.002 0.001 0.070 0.212 0.022 0.188 0.014 78 E 0.004 0.027 0.511 0.002 0.009 0.013 0.006 0.001 0.093 0.046 0.010 0.005 0.272 79 V 0.008 0.055 0.428 0.007 0.005 0.013 0.010 0.002 0.133 0.064 0.009 0.226 0.041 80 N 0.003 0.043 0.680 0.002 0.001 0.008 0.002 0.001 0.053 0.020 0.005 0.009 0.172 81 L 0.001 0.022 0.743 0.002 0.007 0.030 0.001 0.001 0.014 0.096 0.048 0.025 0.011 82 D 0.001 0.003 0.762 0.001 0.007 0.076 0.001 0.001 0.004 0.099 0.032 0.001 0.015 83 F 0.001 0.001 0.009 0.001 0.031 0.894 0.001 0.001 0.001 0.018 0.048 0.001 0.001 84 H 0.001 0.001 0.008 0.001 0.022 0.926 0.001 0.001 0.001 0.006 0.037 0.001 0.001 85 T 0.001 0.001 0.004 0.001 0.010 0.970 0.001 0.001 0.001 0.003 0.012 0.001 0.001 86 K 0.001 0.001 0.002 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.001 0.001 0.001 87 E 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.001 0.001 0.001 88 V 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 89 I 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.002 0.001 0.001 90 T 0.001 0.001 0.001 0.001 0.004 0.985 0.001 0.001 0.001 0.001 0.009 0.001 0.001 91 N 0.001 0.001 0.001 0.001 0.010 0.938 0.001 0.001 0.001 0.002 0.049 0.001 0.001 92 S 0.001 0.001 0.006 0.001 0.031 0.804 0.001 0.001 0.001 0.005 0.154 0.001 0.001 93 I 0.001 0.008 0.109 0.001 0.031 0.555 0.001 0.001 0.003 0.074 0.219 0.001 0.001 94 T 0.001 0.019 0.278 0.001 0.029 0.190 0.001 0.001 0.004 0.192 0.283 0.001 0.003 95 Q 0.001 0.004 0.525 0.001 0.004 0.010 0.001 0.001 0.002 0.426 0.026 0.001 0.001 96 P 0.001 0.013 0.745 0.001 0.016 0.016 0.001 0.001 0.002 0.121 0.084 0.001 0.003 97 T 0.001 0.024 0.656 0.001 0.019 0.037 0.001 0.001 0.007 0.205 0.046 0.002 0.003 98 L 0.001 0.004 0.108 0.001 0.112 0.493 0.001 0.001 0.003 0.118 0.159 0.001 0.001 99 H 0.001 0.009 0.090 0.001 0.083 0.530 0.001 0.001 0.002 0.070 0.212 0.001 0.002 100 S 0.001 0.021 0.098 0.001 0.065 0.651 0.001 0.001 0.004 0.058 0.098 0.001 0.002 101 F 0.001 0.001 0.033 0.001 0.010 0.932 0.001 0.001 0.001 0.009 0.013 0.001 0.001 102 D 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.002 0.001 0.001 103 A 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 104 A 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 105 Q 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 106 S 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 107 R 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 108 V 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 109 Y 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.002 0.001 0.001 110 Q 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.004 0.001 0.001 111 L 0.001 0.001 0.001 0.001 0.001 0.985 0.001 0.001 0.001 0.001 0.013 0.001 0.001 112 M 0.001 0.001 0.005 0.001 0.003 0.932 0.001 0.001 0.001 0.007 0.051 0.001 0.001 113 E 0.001 0.001 0.022 0.001 0.016 0.644 0.001 0.001 0.001 0.014 0.302 0.001 0.001 114 Q 0.001 0.001 0.041 0.001 0.019 0.450 0.001 0.001 0.001 0.085 0.405 0.001 0.001 115 D 0.001 0.003 0.187 0.001 0.033 0.274 0.001 0.001 0.001 0.186 0.315 0.001 0.001 116 S 0.001 0.016 0.208 0.001 0.066 0.348 0.001 0.001 0.003 0.118 0.238 0.001 0.003 117 Y 0.001 0.010 0.176 0.001 0.052 0.537 0.001 0.001 0.003 0.130 0.088 0.001 0.003 118 T 0.001 0.004 0.086 0.001 0.099 0.693 0.001 0.001 0.002 0.041 0.070 0.001 0.002 119 R 0.001 0.002 0.040 0.001 0.088 0.758 0.001 0.001 0.002 0.024 0.081 0.001 0.002 120 F 0.001 0.003 0.038 0.001 0.150 0.642 0.001 0.001 0.001 0.028 0.133 0.001 0.002 121 L 0.001 0.008 0.058 0.001 0.094 0.577 0.001 0.001 0.002 0.037 0.217 0.002 0.002 122 K 0.001 0.005 0.102 0.001 0.032 0.534 0.001 0.001 0.001 0.060 0.262 0.002 0.003 123 S 0.001 0.001 0.284 0.001 0.008 0.565 0.001 0.001 0.001 0.114 0.025 0.001 0.002 124 D 0.001 0.001 0.007 0.001 0.019 0.937 0.001 0.001 0.001 0.005 0.031 0.001 0.001 125 I 0.001 0.001 0.003 0.001 0.014 0.950 0.001 0.001 0.001 0.003 0.029 0.001 0.001 126 Y 0.001 0.001 0.003 0.001 0.014 0.966 0.001 0.001 0.001 0.002 0.013 0.001 0.001 127 L 0.001 0.001 0.003 0.001 0.017 0.970 0.001 0.001 0.001 0.001 0.008 0.001 0.001 128 D 0.001 0.001 0.003 0.001 0.031 0.939 0.001 0.001 0.001 0.002 0.024 0.001 0.001 129 L 0.001 0.001 0.005 0.001 0.048 0.895 0.001 0.001 0.001 0.003 0.047 0.001 0.001 130 M 0.001 0.003 0.029 0.001 0.025 0.780 0.001 0.001 0.001 0.024 0.136 0.001 0.002 131 E 0.001 0.003 0.115 0.001 0.021 0.404 0.001 0.001 0.001 0.033 0.420 0.001 0.002 132 G 0.001 0.001 0.750 0.001 0.007 0.053 0.001 0.001 0.001 0.138 0.048 0.001 0.001