Best Alignments for T0301

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2gkeA/T0301-2gkeA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gkeA/T0301-2gkeA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2570e-051.38e-45
1gqzA/T0301-1gqzA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gqzA/T0301-1gqzA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.8089e-057.33e-46 d.21.1.1
d.21.1.1
1w61A/T0301-1w61A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1w61A/T0301-1w61A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.9281e-052.51e-42
1tm0A/T0301-1tm0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1tm0A/T0301-1tm0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.9551e-033.02e-37 d.21.1.3
1u1wA/T0301-1u1wA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1u1wA/T0301-1u1wA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.3610e-026.96e-33
1t6kA/T0301-1t6kA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1t6kA/T0301-1t6kA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.2650e-021.52e-33
1sdjA/T0301-1sdjA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1sdjA/T0301-1sdjA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.3734e-021.42e-30 d.21.1.2
d.21.1.2
1xubA/T0301-1xubA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xubA/T0301-1xubA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.4598e-021.33e-32
2azpA/T0301-2azpA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2azpA/T0301-2azpA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.3659e-023.56e-34
1ym5A/T0301-1ym5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ym5A/T0301-1ym5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.3544e-021.63e-36

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001