# List of top-scoring protein chains for t2k-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gqzA 274 2.69e-05 d.21.1.1,d.21.1.1 83311,83312 1bwzA 274 9.24e-05 1bwzA d.21.1.1,d.21.1.1 38337,38338 1w61A 414 9.35e-05 2gkeA 274 1.39e-04 1tm0A 350 2.19e-03 d.21.1.3 107147 1z94A 147 3.43e-01 1xubA 298 5.86e-01 1u1wA 298 6.35e-01 1t6kA 278 7.77e-01 1l1nA 183 1.28e+00 b.47.1.4 73476 1sdjA 310 1.32e+00 d.21.1.2,d.21.1.2 98807,98808 2azpA 318 4.06e+00 2g6yA 217 4.40e+00 2a74A 643 6.13e+00 1qyaA 307 6.62e+00 d.21.1.2,d.21.1.2 104653,104654 1ym5A 300 6.81e+00 1vdkA 466 6.88e+00 a.127.1.1 100561 1zvtA 256 7.29e+00 1wc3A 219 1.02e+01 2essA 248 1.02e+01 2d4qA 257 1.09e+01 1d0iA 156 1.14e+01 2dhqA c.23.13.1 31383 1o17A 345 1.15e+01 a.46.2.1,c.27.1.1 80765,80766 1l0wA 580 1.79e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1z5hA 780 1.80e+01 1a6l 106 1.83e+01 1a6l d.58.1.2 38966 1fd2 106 1.86e+01 1a6l d.58.1.2 38962 1v54F 98 1.90e+01 g.41.5.3 100327 1b0tA 106 1.96e+01 1a6l d.58.1.2 38965 1cur 155 2.10e+01 1rcy b.6.1.1 23021 1rec 201 2.11e+01 1rec a.39.1.5 17326 2occF 98 2.15e+01 2occF g.41.5.3 45256 2calA 154 2.16e+01 1u0kA 288 2.29e+01 d.21.1.2,d.21.1.2 107547,107548 1h7wD 1025 2.41e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15686,28631,30327,30612,39010 2ewrA 170 2.51e+01 1a8z 153 2.52e+01 1rcy b.6.1.1 23020 1vkdA 338 2.52e+01 b.67.2.4 108644 2fclA 169 2.57e+01 1e30A 155 2.58e+01 1rcy b.6.1.1 23016 1mkeA 152 2.64e+01 b.55.1.4 79231 1h7wA 1025 2.72e+01 1h7wA a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 1h7xC 1025 2.75e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15689,28634,30330,30615,39013 1h7wB 1025 2.75e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15684,28629,30325,30610,39008 1mxmA 254 2.84e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 1xoyA 161 2.90e+01 1azsB 212 2.91e+01 1azsA d.58.29.1 39423 1gthB 1025 2.98e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70488,70489,70490,70491,70492 1h7xD 1025 3.06e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15690,28635,30331,30616,39014 1gthD 1025 3.11e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70498,70499,70500,70501,70502 1gteD 1025 3.16e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70455,70456,70457,70458,70459 1i1iP 681 3.21e+01 1i1iP d.92.1.5 40297 1xtqA 177 3.26e+01 1usyA 275 3.28e+01 1rcy 151 3.31e+01 1rcy b.6.1.1 23018 1a3z 155 3.34e+01 1rcy b.6.1.1 23019 1h7xA 1025 3.40e+01 1h7wA a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15687,28632,30328,30613,39011 1h7xB 1025 3.42e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15688,28633,30329,30614,39012 1hcz 252 3.47e+01 1hcz b.2.6.1,b.84.2.2 22464,28250 2bhuA 602 3.59e+01 1gthA 1025 3.59e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70483,70484,70485,70486,70487 1vquA 374 3.63e+01 1gteA 1025 3.69e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1qwdA 177 3.71e+01 b.60.1.1 96471 2a6tA 271 3.81e+01 1gthC 1025 3.81e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70493,70494,70495,70496,70497 2fimA 276 3.97e+01 1ioaA 240 4.04e+01 1led b.29.1.1 24168 2pcfB 250 4.09e+01 1hcz i.4.1.1 45911 1h8lA 380 4.17e+01 b.3.2.1,c.56.5.1 65737,65738 1ejxC 567 4.23e+01 b.92.1.1,c.1.9.2 83184,83185 1a5lC 566 4.24e+01 1ubpC b.92.1.1,c.1.9.2 28426,29048 2aaa 484 4.34e+01 7taa b.71.1.1,c.1.8.1 27777,28764 1ecxA 384 4.34e+01 1ecxA c.67.1.3 34431 1a5mC 566 4.35e+01 1ubpC b.92.1.1,c.1.9.2 28423,29045 1a5kC 566 4.35e+01 1ubpC b.92.1.1,c.1.9.2 28425,29047 1oe4A 247 4.40e+01 c.18.1.3 86895 1b7yA 350 4.41e+01 1pysA d.104.1.1 40776 1q47A 495 4.41e+01 b.69.12.1 104532 1ejrC 567 4.41e+01 1ubpC b.92.1.1,c.1.9.2 28420,29042 1fwcC 567 4.42e+01 1ubpC b.92.1.1,c.1.9.2 28410,29032 1o0pA 104 4.42e+01 d.58.7.1 86535 1fjgR 88 4.44e+01 1fjfR a.4.8.1 16252 1avbA 226 4.59e+01 1led b.29.1.1 24158 2sli 679 4.74e+01 2sli b.29.1.9,b.68.1.1 24274,27611 1eo9A 209 4.74e+01 3pchA b.3.6.1 22731 2bjqA 345 4.81e+01 1gt8A 1025 4.83e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70418,70419,70420,70421,70422 1umzA 278 4.85e+01 b.29.1.2 99639 1yg9A 330 4.95e+01 1jx4A 352 4.95e+01 d.240.1.1,e.8.1.7 90378,90379 1lj5A 379 5.08e+01 e.1.1.1 73928 1gt8B 1025 5.33e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70423,70424,70425,70426,70427 1gt8D 1025 5.39e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70433,70434,70435,70436,70437 1z0sA 278 5.44e+01 1k12A 158 5.44e+01 b.18.1.15 71978 1gtzA 156 5.47e+01 c.23.13.1 70539 1omrA 201 5.51e+01 a.39.1.5 93349 1lshA 1056 5.56e+01 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1gqyA 475 5.59e+01 c.5.1.1,c.59.1.1,c.72.2.1 83305,83306,83307 1pnkB 557 5.62e+01 1ajqB 1yqzA 438 5.63e+01 1gt8C 1025 5.76e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70428,70429,70430,70431,70432 1clqA 903 5.89e+01 1clqA c.55.3.5,e.8.1.1 33717,43006 5gcnA 166 5.93e+01 1yghA d.108.1.1 40807 1v61A 132 5.94e+01 b.55.1.1 108389 1suwA 249 6.07e+01 e.52.1.1 106027 1br9 194 6.08e+01 1br9 b.40.3.1 25235 2ghsA 326 6.12e+01 1p3dA 475 6.13e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1wekA 217 6.18e+01 1wkyA 464 6.20e+01 1pb1A 416 6.27e+01 c.77.1.1 88014 1xttA 216 6.39e+01 1jofA 365 6.56e+01 b.69.10.1 71775 1lybB 241 6.68e+01 1smrA 1foaA 348 6.82e+01 1foaA c.68.1.10 59929 1lf6A 684 6.82e+01 a.102.1.5,b.30.5.5 77918,77919 1u9yA 284 6.83e+01 7fd1A 106 6.86e+01 1a6l d.58.1.2 38953 1eg5A 384 6.89e+01 1ecxA c.67.1.3 34429 1a8l 226 6.92e+01 1a8l c.47.1.2,c.47.1.2 32777,32778 4sli 679 7.01e+01 2sli b.29.1.9,b.68.1.1 24275,27612 1a0dA 440 7.23e+01 1a0cA c.1.15.3 29533 1z3qA 200 7.26e+01 1ab8A 220 7.39e+01 1azsA d.58.29.1 39414 1n9pA 207 7.51e+01 b.1.18.16 80343 1ycoA 279 7.57e+01 2gc9A 179 7.59e+01 1mqvA 125 7.61e+01 a.24.3.2 79415 1k0eA 453 7.67e+01 d.161.1.1 67938 1ih7A 903 7.81e+01 1clqA c.55.3.5,e.8.1.1 62375,62376 1eft 405 7.83e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25688,25728,32123 1ffkE 119 7.96e+01 1ffkE d.79.3.1 39812 1viwB 198 8.00e+01 1led b.29.1.1 24170 2a8yA 270 8.02e+01 1s7jA 262 8.09e+01 d.21.1.2 98647 1pysA 350 8.11e+01 1pysA d.104.1.1 40775 1j6uA 469 8.21e+01 c.5.1.1,c.59.1.1,c.72.2.1 77094,77095,77096 2sak 121 8.23e+01 2sak d.15.5.1 37711 1jihA 531 8.39e+01 d.240.1.1,e.8.1.7 90374,90375 1ekfA 365 8.50e+01 1ekfA e.17.1.1 59445 1ton 235 8.83e+01 5ptp b.47.1.2 26307 1cqqA 180 8.85e+01 1cqqA b.47.1.4 26422