# List of top-scoring protein chains for T0301.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gkeA 274 8.33e-03 1bwzA 274 1.02e-02 1bwzA d.21.1.1,d.21.1.1 38337,38338 1w61A 414 3.67e-02 1uf2K 506 1.10e+00 2b3nA 159 1.53e+00 1s6yA 450 1.67e+00 c.2.1.5,d.162.1.2 105314,105315 1tm0A 350 1.67e+00 d.21.1.3 107147 1udeA 195 2.94e+00 b.40.5.1 99208 1kkoA 413 3.48e+00 c.1.11.2,d.54.1.1 68675,68676 1y9kA 157 3.75e+00 1lm6A 215 3.86e+00 d.167.1.1 84628 2aieP 203 4.58e+00 2aiaA 203 4.79e+00 1shzC 233 7.35e+00 1o9jA 501 7.41e+00 c.82.1.1 86694 1u7vB 236 9.29e+00 b.26.1.1 107730 1wchA 315 9.42e+00 1g88A 268 9.43e+00 1ygs b.26.1.1 23911 1ci0A 228 9.50e+00 1ci0A b.45.1.1 25750 1ygs 234 9.51e+00 1ygs b.26.1.1 23907 1mr1A 235 9.53e+00 b.26.1.1 79418 1u7fB 239 9.62e+00 b.26.1.1 107721 1hfeL 421 9.68e+00 1fehA c.96.1.1,d.58.1.5 36018,39001 1dd1A 268 9.70e+00 b.26.1.1 23908 1xhkA 187 1.07e+01 1xa6A 466 1.07e+01 2g23A 612 1.08e+01 1e08A 371 1.11e+01 i.4.1.1 45914 1b1cA 181 1.21e+01 1amoA c.23.5.2 31212 1ioiA 208 1.43e+01 1a2zA c.56.4.1 62629 1iofA 208 1.48e+01 1a2zA c.56.4.1 62625 1de0A 289 1.61e+01 1cp2A c.37.1.10 32255 2afhE 289 1.68e+01 1xd8A 289 1.72e+01 1re5A 450 1.73e+01 a.127.1.1 104911 2ax3A 502 1.73e+01 1jscA 630 1.73e+01 c.31.1.3,c.36.1.5,c.36.1.9 67224,67225,67226 1l1nA 183 1.75e+01 b.47.1.4 73476 1g20E 289 1.76e+01 1cp2A c.37.1.10 32247 1s5jA 847 1.78e+01 1ewrA 649 1.80e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1 19073,32387,33744 1rw4A 272 1.82e+01 c.37.1.10 97962 1hl9A 449 1.84e+01 b.71.1.3,c.1.8.11 90650,90651 1z05A 429 1.86e+01 1ewqA 765 1.92e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 1fw6A 768 1.93e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19071,32385,33742,39745 2biwA 490 2.02e+01 1t9bA 677 2.14e+01 1xdbA 289 2.19e+01 1vk1A 242 2.36e+01 d.268.1.2 108634 1ioaA 240 2.41e+01 1led b.29.1.1 24168 1sdjA 310 2.60e+01 d.21.1.2,d.21.1.2 98807,98808 2a9bA 372 2.61e+01 1pgjA 478 2.62e+01 2pgd a.100.1.1,c.2.1.6 18783,30195 1f74A 293 2.69e+01 1nal3 c.1.10.1 29079 2a9aA 372 2.72e+01 2fug3 783 2.79e+01 1jazA 326 2.80e+01 c.88.1.1 90883 1nnsA 326 2.89e+01 c.88.1.1 85910 1ho3A 326 2.90e+01 4pgaA c.88.1.1 61101 1qyaA 307 2.91e+01 d.21.1.2,d.21.1.2 104653,104654 1qy9A 297 2.91e+01 d.21.1.2,d.21.1.2 104645,104646 4ecaA 326 2.94e+01 4pgaA c.88.1.1 35550 1w78A 422 3.07e+01 1hus 155 3.22e+01 1rss a.75.1.1 18391 1f5vA 240 3.23e+01 1bkjA d.90.1.1 40255 1soxA 466 3.35e+01 1soxA b.1.18.6,d.120.1.1,d.176.1.1 21947,41090,42563 1f3dJ 219 3.39e+01 32c2A b.1.1.1,b.1.1.2 20461,21425 1s4iA 175 3.46e+01 1st8A 543 3.52e+01 1xi6A 262 4.00e+01 1vhxA 150 4.12e+01 c.55.3.8 100712 2f6uA 234 4.14e+01 2g6yA 217 4.16e+01 2deoA 230 4.18e+01 1u3nA 162 4.36e+01 1l9uC 1118 4.62e+01 i.8.1.1 73750 1i6vC 1118 4.62e+01 e.29.1.1 61856 1e0fI 57 4.62e+01 1e0fI g.3.15.2 44377 1ynjC 1119 4.65e+01 1hqmC 1119 4.65e+01 i.8.1.1 45974 2a6hC 1119 4.87e+01 1zbpA 273 4.88e+01 1itwA 741 4.90e+01 c.77.1.2 76793 1gynA 358 4.91e+01 c.1.10.2 83385 1xfjA 261 4.93e+01 d.194.1.2 109585 1wstA 417 4.98e+01 1g0uD 241 4.98e+01 d.153.1.4 41949 1wqwA 235 5.05e+01 1lw7A 365 5.10e+01 c.26.1.3,c.37.1.1 74295,74296 1cp2A 269 5.14e+01 1cp2A c.37.1.10 32269 1gu6A 452 5.19e+01 a.138.1.3 70575 1baiA 124 5.35e+01 2rspB b.50.1.1 26773 1nscA 390 5.38e+01 2qwc b.68.1.1 27591 1oe4A 247 5.48e+01 c.18.1.3 86895 2cakA 154 5.55e+01 1wltA 196 5.69e+01 1ja1A 622 5.74e+01 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1sj2A 743 5.76e+01 a.93.1.3,a.93.1.3 105597,105598 2ccaA 740 5.76e+01 1ja0A 620 5.76e+01 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62798,62799,62800 1j9zA 622 5.76e+01 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62792,62793,62794 1amoA 615 5.78e+01 1amoA b.43.4.1,c.23.5.2,c.25.1.4 25669,31210,31557 1xx6A 191 5.81e+01 2rspA 124 6.01e+01 2rspB b.50.1.1 26771 2gsq 202 6.35e+01 1pd21 a.45.1.1,c.47.1.5 17715,33009 1hixA 190 6.36e+01 b.29.1.11 65839 1uc2A 481 6.45e+01 d.261.1.1 99161 1ef8A 261 6.50e+01 1ef8A c.14.1.3 30921 1dlwA 116 6.76e+01 1dlyA a.1.1.1 14982 1n1jB 97 6.93e+01 a.22.1.3 79814 2ccdA 740 7.02e+01 1zccA 248 7.03e+01 1ortA 335 7.19e+01 1othA c.78.1.1,c.78.1.1 35204,35205 1i2sA 282 7.28e+01 e.3.1.1 71104 1prxA 224 7.43e+01 1prxA c.47.1.10 33076 1mvpA 124 7.48e+01 2rspB b.50.1.1 26775 1k6nL 281 7.51e+01 f.26.1.1 72090 1miqA 375 7.58e+01 b.50.1.2 79151 2a5vA 213 7.84e+01 4blmA 265 7.84e+01 1btl e.3.1.1 42721 1ym3A 215 7.87e+01 2aw5A 541 7.90e+01 1dxhA 335 7.92e+01 1othA c.78.1.1,c.78.1.1 35202,35203 1nqbA 256 7.95e+01 1mfa b.1.1.1,b.1.1.1 20042,20043 1ob0A 483 7.96e+01 b.71.1.1,c.1.8.1 81256,81257 1kelL 217 7.96e+01 8fabA b.1.1.1,b.1.1.2 20112,21142 1kvkA 395 8.04e+01 d.14.1.5,d.58.26.3 73060,73061 1plgL 215 8.15e+01 8fabA b.1.1.1,b.1.1.2 20080,21112 1ystL 273 8.25e+01 6prcL f.26.1.1 43509 1l8kA 314 8.28e+01 c.45.1.2 73691 2ag0A 563 8.30e+01 1h21A 247 8.33e+01 a.138.1.3 76510 1vhzA 198 8.33e+01 d.113.1.1 100718 1jh0L 281 8.44e+01 f.26.1.1 63036 1mblA 256 8.47e+01 1btl e.3.1.1 42723 2a8nA 144 8.77e+01 1f20A 435 8.78e+01 b.43.4.1,c.25.1.4 64932,64933 1gdeA 389 8.87e+01 c.67.1.1 60456 1djuA 388 8.90e+01 1bjwA c.67.1.1 59116