# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gqzA 274 5.48e-06 d.21.1.1,d.21.1.1 83311,83312 2gkeA 274 8.78e-06 1sdjA 310 1.18e-01 d.21.1.2,d.21.1.2 98807,98808 1xubA 298 2.78e-01 1qyaA 307 7.40e-01 d.21.1.2,d.21.1.2 104653,104654 1o17A 345 1.83e+00 a.46.2.1,c.27.1.1 80765,80766 1e8gA 560 2.96e+00 1qltA d.58.32.1,d.145.1.1 39455,41718 1mixA 206 3.07e+00 a.11.2.1,b.55.1.5 79166,79167 1ejxC 567 3.20e+00 b.92.1.1,c.1.9.2 83184,83185 1ofzA 312 5.07e+00 b.68.8.1 86978 2sli 679 5.12e+00 2sli b.29.1.9,b.68.1.1 24274,27611 1nbwA 607 5.16e+00 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 1mo9A 523 5.70e+00 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1dp4A 435 6.57e+00 1dp4A c.93.1.1 35710 1gteA 1025 6.59e+00 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1ev7A 317 6.73e+00 1ev7B c.52.1.9 33315 1b5pA 385 7.06e+00 c.67.1.1 90403 1vdkA 466 7.14e+00 a.127.1.1 100561 1ab8A 220 7.72e+00 1azsA d.58.29.1 39414 1azsA 220 8.48e+00 1azsA d.58.29.1 39416 1lf6A 684 8.48e+00 a.102.1.5,b.30.5.5 77918,77919 1lshA 1056 8.83e+00 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1cqqA 180 9.48e+00 1cqqA b.47.1.4 26422 1nnsA 326 9.56e+00 c.88.1.1 85910 1o97D 320 1.02e+01 c.26.2.3,c.31.1.2 81233,81234 1v58A 241 1.08e+01 c.47.1.9,d.17.3.1 108371,108372 1gqeA 365 1.14e+01 e.38.1.1 70351 1pzsA 208 1.14e+01 b.1.8.1 104397 1br9 194 1.20e+01 1br9 b.40.3.1 25235 1kvkA 395 1.41e+01 d.14.1.5,d.58.26.3 73060,73061 1lj5A 379 1.42e+01 e.1.1.1 73928 1oe4A 247 1.42e+01 c.18.1.3 86895 1mxmA 254 1.49e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 1p3dA 475 1.61e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1e30A 155 1.68e+01 1rcy b.6.1.1 23016 1j1iA 296 1.70e+01 c.69.1.10 83977 1dzlA 505 1.84e+01 1dzlA b.121.6.1 23586 1yg9A 330 1.95e+01 1nscA 390 1.97e+01 2qwc b.68.1.1 27591 1d7pM 159 2.01e+01 1cztA b.18.1.2 23718 1bupA 386 2.11e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 1mkaA 171 2.23e+01 1mkaA d.38.1.2 38543 1g5cA 170 2.32e+01 1g5cA c.53.2.1 60264 1avbA 226 2.43e+01 1led b.29.1.1 24158 1x99A 145 2.59e+01 1kq3A 376 2.76e+01 e.22.1.2 68790 2sak 121 2.79e+01 2sak d.15.5.1 37711 1ej8A 140 2.85e+01 1qupA b.1.8.1 22300 1cuoA 129 2.96e+01 1nwpA b.6.1.1 23015 1suwA 249 2.98e+01 e.52.1.1 106027 1v54F 98 3.01e+01 g.41.5.3 100327 1gkmA 509 3.02e+01 a.127.1.2 70228 1jf9A 408 3.07e+01 1c0nA c.67.1.3 62931 1w6uA 302 3.11e+01 1ton 235 3.13e+01 5ptp b.47.1.2 26307 1bkb 136 3.15e+01 1bkb b.34.5.2,b.40.4.5 24609,25341 1tmxA 293 3.23e+01 1rz3A 201 3.30e+01 c.37.1.6 98132 1g291 372 3.37e+01 1g291 1oxdA 227 3.38e+01 d.22.1.1 93687 1or0B 528 3.45e+01 1ng2A 193 3.45e+01 b.34.2.1,b.34.2.1 85660,85661 1r2rA 248 3.46e+01 c.1.1.1 96875 1jb7B 260 3.48e+01 1otcB b.40.4.3 62839 1i40A 175 3.49e+01 b.40.5.1 66024 1prxA 224 3.62e+01 1prxA c.47.1.10 33076 1k12A 158 3.69e+01 b.18.1.15 71978 1o97C 264 3.73e+01 c.26.2.3 81232 1lm8V 160 3.74e+01 b.3.3.1 74035 1sr8A 298 3.74e+01 e.54.1.1 105959 1mqoA 227 3.77e+01 d.157.1.1 103846 1t6cA 315 3.86e+01 c.55.1.8,c.55.1.8 106558,106559 1kr7A 110 4.01e+01 a.1.1.4 72890 1w6sA 599 4.03e+01 1sg4A 260 4.05e+01 1budA 197 4.06e+01 1atlA d.92.1.9 40328 1fo8A 343 4.08e+01 1foaA c.68.1.10 59927 1o7nA 449 4.11e+01 b.33.1.2,d.129.3.3 81162,81163 1r7lA 110 4.13e+01 d.277.1.1 104837 1ryaA 160 4.19e+01 d.113.1.5 105122 1kk1A 410 4.25e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1omrA 201 4.41e+01 a.39.1.5 93349 1pjcA 361 4.43e+01 1sayA c.2.1.4,c.23.12.2 30101,31361 1fm4A 159 4.55e+01 1bv1 d.129.3.1 76186 1q7lA 198 4.59e+01 c.56.5.4 96044 1fxoA 293 4.67e+01 1g0rA c.68.1.6 34524 1q1rA 431 4.74e+01 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1kkoA 413 5.02e+01 c.1.11.2,d.54.1.1 68675,68676 1dgfA 497 5.04e+01 1cf9A e.5.1.1 42782 1kshB 152 5.07e+01 b.1.18.8 72915 1hj8A 222 5.08e+01 b.47.1.2 65844 1j58A 385 5.16e+01 b.82.1.2 71531 1gk9B 557 5.31e+01 1pkhA 204 5.42e+01 b.85.4.1 94832 1josA 128 5.51e+01 d.52.7.1 84191 1p1mA 406 5.55e+01 b.92.1.4,c.1.9.9 87696,87697 1shyB 551 5.56e+01 b.69.12.1,g.16.2.1 105565,105566 2gfaA 119 5.60e+01 1jssA 224 5.61e+01 d.129.3.2 71844 1h5rA 293 5.70e+01 c.68.1.6 65623 1gttA 429 5.87e+01 d.177.1.1,d.177.1.1 70529,70530 1n9pA 207 5.90e+01 b.1.18.16 80343 1g0sA 209 5.94e+01 1g0sA d.113.1.1 60187 4uagA 437 5.97e+01 4uagA c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1qwyA 291 6.02e+01 b.84.3.2 96509 1rypJ 204 6.08e+01 d.153.1.4 41878 1uf5A 303 6.28e+01 d.160.1.2 107808 1p7tA 731 6.30e+01 c.1.13.1 94319 1ejfA 125 6.33e+01 1ejfA b.15.1.2 23683 1rzuA 485 6.47e+01 c.87.1.8 105140 1b63A 333 6.49e+01 1b63A d.14.1.3,d.122.1.2 37566,41107 1otgA 125 6.51e+01 1otgA d.80.1.2 39831 1dykA 394 6.57e+01 1dykA b.29.1.4,b.29.1.4 24223,24224 1k24A 253 6.58e+01 f.4.4.2 72002 1dlwA 116 6.75e+01 1dlyA a.1.1.1 14982 1uebA 184 6.81e+01 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 1rqwA 207 6.83e+01 b.25.1.1 97781 1hzdA 272 6.87e+01 c.14.1.3 65969 1sg6A 393 6.96e+01 e.22.1.1 105522 2bjqA 345 7.06e+01 1gtzA 156 7.12e+01 c.23.13.1 70539 1bypA 99 7.13e+01 1plc b.6.1.1 22858 1dwnA 127 7.29e+01 1dwnA d.85.1.1 40141 1b7yB 785 7.37e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 1on3A 523 7.46e+01 c.14.1.4,c.14.1.4 87107,87108 1feuA 206 7.50e+01 1feuA b.53.1.1 59801 1m2tA 254 7.51e+01 d.165.1.1 84761 1f08A 148 7.53e+01 1f08A d.89.1.2 59564 1epfA 191 7.54e+01 2ncm b.1.1.4,b.1.1.4 21694,21695 1o5zA 442 7.56e+01 c.59.1.2,c.72.2.2 92530,92531 1sjwA 144 7.58e+01 d.17.4.9 98899 1j1tA 233 7.67e+01 b.29.1.18 90771 1hbnC 248 7.69e+01 1mroC d.58.31.1 60902 1sk4A 163 7.74e+01 d.118.1.1 105664 1b93A 152 7.82e+01 1b93A c.24.1.2 31507 1g7sA 594 7.83e+01 1g7rA b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 1y8oB 128 7.89e+01 1dl5A 317 7.93e+01 1dl5A c.66.1.7,d.197.1.1 64720,64721 1wp5A 323 7.96e+01 1khdA 345 8.07e+01 a.46.2.1,c.27.1.1 77400,77401 1ogsA 497 8.08e+01 b.71.1.2,c.1.8.3 86997,86998 1tg7A 971 8.16e+01 1ikpA 613 8.17e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1m1sA 116 8.19e+01 b.1.11.2 84747 1mqvA 125 8.19e+01 a.24.3.2 79415 1b7yA 350 8.23e+01 1pysA d.104.1.1 40776 1f9yA 158 8.23e+01 d.58.30.1 83249 2gk9A 426 8.27e+01 1cjcA 460 8.35e+01 1cjcA c.3.1.1,c.4.1.1 30319,30604 1molA 94 8.36e+01 1molA d.17.1.1 37988 1j5wA 298 8.41e+01 d.104.1.1 71589 1ep3B 262 8.54e+01 1ep2B b.43.4.2,c.25.1.3 25664,31554 1fjjA 159 8.69e+01 1fjjA b.17.1.2 59852 1x82A 190 8.76e+01 1g8iA 190 8.79e+01 1rec a.39.1.5 60363 1m0wA 491 8.82e+01 c.30.1.4,d.142.1.6 78363,78364 1g87A 614 8.82e+01 a.102.1.2,b.2.2.2 83275,83276 1rc6A 261 8.94e+01 b.82.1.11 97287 1suuA 312 8.96e+01 b.68.10.1 99006