# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gqzA 274 9.60e-05 d.21.1.1,d.21.1.1 83311,83312 2gkeA 274 1.04e-04 1sdjA 310 6.11e-01 d.21.1.2,d.21.1.2 98807,98808 1xubA 298 6.84e-01 1qyaA 307 1.59e+00 d.21.1.2,d.21.1.2 104653,104654 1nnsA 326 5.87e+00 c.88.1.1 85910 1t6cA 315 6.39e+00 c.55.1.8,c.55.1.8 106558,106559 1ofzA 312 6.97e+00 b.68.8.1 86978 1vdkA 466 7.31e+00 a.127.1.1 100561 1ab8A 220 7.92e+00 1azsA d.58.29.1 39414 1mo9A 523 9.67e+00 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1cqqA 180 1.04e+01 1cqqA b.47.1.4 26422 1dp4A 435 1.08e+01 1dp4A c.93.1.1 35710 1e30A 155 1.11e+01 1rcy b.6.1.1 23016 1gteA 1025 1.16e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1v58A 241 1.18e+01 c.47.1.9,d.17.3.1 108371,108372 1o17A 345 1.23e+01 a.46.2.1,c.27.1.1 80765,80766 1o97D 320 1.23e+01 c.26.2.3,c.31.1.2 81233,81234 1kvkA 395 1.27e+01 d.14.1.5,d.58.26.3 73060,73061 1kq3A 376 1.34e+01 e.22.1.2 68790 1oe4A 247 1.56e+01 c.18.1.3 86895 1n7vA 555 1.61e+01 b.126.1.1 85377 1pkhA 204 1.61e+01 b.85.4.1 94832 1gqeA 365 1.74e+01 e.38.1.1 70351 1k24A 253 1.86e+01 f.4.4.2 72002 1so7A 382 1.87e+01 1ejxC 567 1.99e+01 b.92.1.1,c.1.9.2 83184,83185 1mkiA 330 2.00e+01 e.3.1.2 84994 1suwA 249 2.00e+01 e.52.1.1 106027 1avbA 226 2.45e+01 1led b.29.1.1 24158 1rzhL 281 2.52e+01 f.26.1.1 98164 1prxA 224 2.63e+01 1prxA c.47.1.10 33076 1sa3A 262 2.83e+01 c.52.1.23 105400 1gtzA 156 2.84e+01 c.23.13.1 70539 1ton 235 2.94e+01 5ptp b.47.1.2 26307 1mqoA 227 3.00e+01 d.157.1.1 103846 1g0sA 209 3.17e+01 1g0sA d.113.1.1 60187 1p3dA 475 3.29e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1bkb 136 3.34e+01 1bkb b.34.5.2,b.40.4.5 24609,25341 1cl8A 276 3.38e+01 1ckqA c.52.1.1 33230 1budA 197 3.40e+01 1atlA d.92.1.9 40328 1odmA 331 3.43e+01 b.82.2.1 86875 1ep3B 262 3.47e+01 1ep2B b.43.4.2,c.25.1.3 25664,31554 1js8A 394 3.49e+01 a.86.1.1,b.112.1.1 67219,67220 1f00I 282 3.52e+01 1f00I b.1.14.1,b.1.14.1,d.169.1.3 22368,22369,42439 1hj8A 222 3.52e+01 b.47.1.2 65844 2gfaA 119 3.53e+01 1mxmA 254 3.71e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 1fi4A 416 3.92e+01 1fi4A d.14.1.5,d.58.26.2 59847,59848 1w6sA 599 4.15e+01 1g291 372 4.18e+01 1g291 1azsA 220 4.22e+01 1azsA d.58.29.1 39416 2sli 679 4.28e+01 2sli b.29.1.9,b.68.1.1 24274,27611 1tafB 70 4.30e+01 1tafB a.22.1.3 16482 1xe7A 203 4.31e+01 1uf5A 303 4.32e+01 d.160.1.2 107808 1x99A 145 4.39e+01 1gkmA 509 4.51e+01 a.127.1.2 70228 1o5zA 442 4.58e+01 c.59.1.2,c.72.2.2 92530,92531 1or0B 528 4.69e+01 1hzdA 272 4.73e+01 c.14.1.3 65969 1dgfA 497 4.80e+01 1cf9A e.5.1.1 42782 1hbnC 248 4.85e+01 1mroC d.58.31.1 60902 1josA 128 4.92e+01 d.52.7.1 84191 1lm8V 160 4.97e+01 b.3.3.1 74035 1pzsA 208 4.98e+01 b.1.8.1 104397 1h2kA 349 4.99e+01 b.82.2.6 76572 1ut1A 148 5.00e+01 b.2.3.6 108014 1m1sA 116 5.07e+01 b.1.11.2 84747 1b63A 333 5.09e+01 1b63A d.14.1.3,d.122.1.2 37566,41107 1sg6A 393 5.33e+01 e.22.1.1 105522 1shyB 551 5.35e+01 b.69.12.1,g.16.2.1 105565,105566 1e4mM 501 5.36e+01 1e70M c.1.8.4 59226 1i8aA 189 5.47e+01 1i82A b.1.9.2 61951 1oa4A 222 5.56e+01 b.29.1.11 86731 1ospO 257 5.67e+01 1ospO b.76.1.1 27971 1nbwA 607 5.95e+01 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 1j1iA 296 5.98e+01 c.69.1.10 83977 1epfA 191 6.14e+01 2ncm b.1.1.4,b.1.1.4 21694,21695 1j5pA 253 6.29e+01 d.81.1.3,c.2.1.3 71577,83092 1kk1A 410 6.35e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1d7pM 159 6.43e+01 1cztA b.18.1.2 23718 1f9zA 135 6.53e+01 1qipA d.32.1.1 38484 1rzuA 485 6.57e+01 c.87.1.8 105140 1sk4A 163 6.59e+01 d.118.1.1 105664 1nscA 390 6.63e+01 2qwc b.68.1.1 27591 1h9dB 134 6.69e+01 2jhbA b.54.1.1 60822 1dlwA 116 6.72e+01 1dlyA a.1.1.1 14982 1gk9B 557 6.80e+01 1ixlA 131 6.83e+01 d.38.1.5 90717 1i4uA 181 6.96e+01 b.60.1.1 61732 1sr8A 298 7.05e+01 e.54.1.1 105959 1krhA 338 7.07e+01 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 1b5pA 385 7.08e+01 c.67.1.1 90403 2gk9A 426 7.09e+01 1qwlA 505 7.19e+01 e.5.1.1 96483 1bupA 386 7.21e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 1ijyA 130 7.25e+01 1ijxA a.141.1.1 62517 1omrA 201 7.31e+01 a.39.1.5 93349 1molA 94 7.34e+01 1molA d.17.1.1 37988 1lf6A 684 7.35e+01 a.102.1.5,b.30.5.5 77918,77919 1b7yA 350 7.38e+01 1pysA d.104.1.1 40776 1mixA 206 7.42e+01 a.11.2.1,b.55.1.5 79166,79167 1mp9A 198 7.59e+01 d.129.1.1,d.129.1.1 91385,91386 1r7lA 110 7.61e+01 d.277.1.1 104837 1fm4A 159 7.70e+01 1bv1 d.129.3.1 76186 1jf9A 408 7.77e+01 1c0nA c.67.1.3 62931 1b12A 248 7.78e+01 1b12A b.87.1.2 28388 1j1nA 492 8.02e+01 c.94.1.1 83978 1yg9A 330 8.18e+01 1n9pA 207 8.20e+01 b.1.18.16 80343 1aa6 715 8.20e+01 2napA b.52.2.2,c.81.1.1 26916,35324 1kmtA 141 8.30e+01 b.1.18.8 77442 1q1rA 431 8.34e+01 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1uebA 184 8.51e+01 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 1mrzA 293 8.57e+01 b.43.5.1,c.26.1.3 91452,91453 2gf9A 189 8.62e+01 1e2wA 251 8.71e+01 1hcz b.2.6.1,b.84.2.2 22466,28252 1t6aA 126 8.84e+01 d.129.8.1 106555 1x82A 190 8.85e+01 1f15A 218 8.91e+01 1f15B b.121.4.5 23320