# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gkeA 274 5.71e-08 1gqzA 274 6.36e-08 d.21.1.1,d.21.1.1 83311,83312 1sdjA 310 8.63e-03 d.21.1.2,d.21.1.2 98807,98808 1xubA 298 1.14e-02 1qyaA 307 1.05e-01 d.21.1.2,d.21.1.2 104653,104654 1o17A 345 5.81e-01 a.46.2.1,c.27.1.1 80765,80766 1hx0A 496 1.56e+00 b.71.1.1,c.1.8.1 61346,61347 1vdkA 466 2.13e+00 a.127.1.1 100561 1ejxC 567 2.40e+00 b.92.1.1,c.1.9.2 83184,83185 1mo9A 523 3.15e+00 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1oa4A 222 4.70e+00 b.29.1.11 86731 1ixlA 131 4.82e+00 d.38.1.5 90717 1nnsA 326 5.26e+00 c.88.1.1 85910 1g0sA 209 5.27e+00 1g0sA d.113.1.1 60187 1e30A 155 5.77e+00 1rcy b.6.1.1 23016 1gteA 1025 6.14e+00 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1yg9A 330 6.63e+00 1gtzA 156 6.92e+00 c.23.13.1 70539 2sli 679 6.93e+00 2sli b.29.1.9,b.68.1.1 24274,27611 1lshA 1056 8.13e+00 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1sr8A 298 8.19e+00 e.54.1.1 105959 1e4mM 501 8.59e+00 1e70M c.1.8.4 59226 1smd 496 8.74e+00 1smd b.71.1.1,c.1.8.1 27768,28755 1prxA 224 8.97e+00 1prxA c.47.1.10 33076 1nscA 390 9.13e+00 2qwc b.68.1.1 27591 1wp5A 323 9.74e+00 1dkmA 410 9.91e+00 1dklA c.60.1.2 34000 1g5cA 170 1.01e+01 1g5cA c.53.2.1 60264 1x99A 145 1.04e+01 1oe4A 247 1.05e+01 c.18.1.3 86895 1uebA 184 1.10e+01 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 1omrA 201 1.11e+01 a.39.1.5 93349 1bupA 386 1.12e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 1k24A 253 1.13e+01 f.4.4.2 72002 1josA 128 1.13e+01 d.52.7.1 84191 1vrmA 325 1.16e+01 1budA 197 1.22e+01 1atlA d.92.1.9 40328 1ab8A 220 1.23e+01 1azsA d.58.29.1 39414 1qstA 160 1.28e+01 1yghA d.108.1.1 40804 1v58A 241 1.34e+01 c.47.1.9,d.17.3.1 108371,108372 1dkqA 410 1.35e+01 1dklA c.60.1.2 33998 1mqoA 227 1.37e+01 d.157.1.1 103846 1br9 194 1.37e+01 1br9 b.40.3.1 25235 1nbwA 607 1.38e+01 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 1ospO 257 1.41e+01 1ospO b.76.1.1 27971 1ogsA 497 1.41e+01 b.71.1.2,c.1.8.3 86997,86998 1ofzA 312 1.45e+01 b.68.8.1 86978 1kv7A 488 1.60e+01 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 1dp4A 435 1.67e+01 1dp4A c.93.1.1 35710 1suuA 312 1.69e+01 b.68.10.1 99006 1o8bA 219 1.75e+01 c.124.1.4,d.58.40.1 81180,81181 1cv8 174 1.92e+01 1cv8 d.3.1.1 37089 1k12A 158 1.99e+01 b.18.1.15 71978 1j1tA 233 2.01e+01 b.29.1.18 90771 1pzsA 208 2.01e+01 b.1.8.1 104397 1khdA 345 2.05e+01 a.46.2.1,c.27.1.1 77400,77401 1f9zA 135 2.05e+01 1qipA d.32.1.1 38484 1p3dA 475 2.07e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1mqvA 125 2.08e+01 a.24.3.2 79415 1hzdA 272 2.14e+01 c.14.1.3 65969 1lm4A 194 2.22e+01 d.167.1.1 84626 1ekjA 221 2.23e+01 1ekjB c.53.2.1 33364 1fnnA 389 2.27e+01 1fnnA a.4.5.11,c.37.1.20 16129,32426 1kbvA 327 2.28e+01 b.6.1.3,b.6.1.3 68395,68396 1hbnC 248 2.33e+01 1mroC d.58.31.1 60902 1r17A 343 2.33e+01 b.2.3.4,b.2.3.4 96796,96797 1ryiA 382 2.38e+01 1fc6A 388 2.41e+01 1fc6A b.36.1.3,c.14.1.2 64738,64739 1b12A 248 2.43e+01 1b12A b.87.1.2 28388 1gk9B 557 2.46e+01 1sk4A 163 2.51e+01 d.118.1.1 105664 1lf6A 684 2.54e+01 a.102.1.5,b.30.5.5 77918,77919 1ev7A 317 2.54e+01 1ev7B c.52.1.9 33315 1lj5A 379 2.55e+01 e.1.1.1 73928 1q1rA 431 2.56e+01 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1fh0A 221 2.67e+01 1cs8A d.3.1.1 59832 1so7A 382 2.80e+01 1rz3A 201 2.89e+01 c.37.1.6 98132 1m1sA 116 3.00e+01 b.1.11.2 84747 1h9dB 134 3.00e+01 2jhbA b.54.1.1 60822 1tafB 70 3.09e+01 1tafB a.22.1.3 16482 1avbA 226 3.11e+01 1led b.29.1.1 24158 1fm4A 159 3.13e+01 1bv1 d.129.3.1 76186 1epfA 191 3.14e+01 2ncm b.1.1.4,b.1.1.4 21694,21695 1rzuA 485 3.17e+01 c.87.1.8 105140 1w6sA 599 3.17e+01 1w99A 558 3.20e+01 1kq3A 376 3.23e+01 e.22.1.2 68790 1suwA 249 3.23e+01 e.52.1.1 106027 2gfaA 119 3.28e+01 1kk1A 410 3.29e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1b5pA 385 3.34e+01 c.67.1.1 90403 1h8eA 510 3.35e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1pkhA 204 3.36e+01 b.85.4.1 94832 1drw 273 3.44e+01 1drw c.2.1.3,d.81.1.3 30057,39972 1cqqA 180 3.56e+01 1cqqA b.47.1.4 26422 1ut1A 148 3.59e+01 b.2.3.6 108014 1jofA 365 3.59e+01 b.69.10.1 71775 1gttA 429 3.60e+01 d.177.1.1,d.177.1.1 70529,70530 1r7lA 110 3.63e+01 d.277.1.1 104837 1g7sA 594 3.68e+01 1g7rA b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 1hw5A 210 3.81e+01 2cgpA a.4.5.4,b.82.3.2 16098,28137 1f00I 282 3.87e+01 1f00I b.1.14.1,b.1.14.1,d.169.1.3 22368,22369,42439 1jf9A 408 3.88e+01 1c0nA c.67.1.3 62931 1o7nA 449 3.90e+01 b.33.1.2,d.129.3.3 81162,81163 1tg7A 971 3.93e+01 1q7lA 198 3.94e+01 c.56.5.4 96044 1n9lA 109 3.94e+01 d.110.3.6 85468 1dmhA 311 3.95e+01 1dmhA b.3.6.1 22633 1hdkA 141 4.00e+01 b.29.1.3 65807 1q3iA 214 4.02e+01 d.220.1.1 104524 1d7pM 159 4.03e+01 1cztA b.18.1.2 23718 1pjcA 361 4.08e+01 1sayA c.2.1.4,c.23.12.2 30101,31361 1sgwA 214 4.08e+01 c.37.1.12 105541 1byrA 155 4.09e+01 1byrA d.136.1.1 41450 1l6xA 207 4.09e+01 b.1.1.2,b.1.1.2 73642,73643 1y8oB 128 4.14e+01 1xe7A 203 4.14e+01 1cdy 178 4.29e+01 1cdy b.1.1.1,b.1.1.3 19719,21658 1v7wA 807 4.32e+01 a.102.1.4,b.30.5.3 108411,108412 1n9pA 207 4.35e+01 b.1.18.16 80343 1d3bA 75 4.35e+01 1d3bA b.38.1.1 24798 1fi4A 416 4.43e+01 1fi4A d.14.1.5,d.58.26.2 59847,59848 1pyoA 167 4.54e+01 c.17.1.1 95370 1dhkB 223 4.58e+01 1led b.29.1.1 24157 1g8iA 190 4.60e+01 1rec a.39.1.5 60363 1odmA 331 4.61e+01 b.82.2.1 86875 1or0B 528 4.68e+01 1x82A 190 4.73e+01 1dl5A 317 4.75e+01 1dl5A c.66.1.7,d.197.1.1 64720,64721 1fo8A 343 4.78e+01 1foaA c.68.1.10 59927 1rc6A 261 4.91e+01 b.82.1.11 97287 1qwdA 177 4.91e+01 b.60.1.1 96471 2pvbA 107 4.92e+01 1a75A a.39.1.4 17205 1dlwA 116 4.93e+01 1dlyA a.1.1.1 14982 1wvgA 359 4.96e+01 1b7yA 350 4.96e+01 1pysA d.104.1.1 40776 1mngA 203 5.05e+01 1avmA a.2.11.1,d.44.1.1 15776,38701 1bkb 136 5.08e+01 1bkb b.34.5.2,b.40.4.5 24609,25341 1x6zA 123 5.12e+01 1iq6A 134 5.13e+01 d.38.1.4 76755 1hj8A 222 5.17e+01 b.47.1.2 65844 1upqA 123 5.24e+01 1k8kE 178 5.25e+01 a.148.1.1 68311 1kr7A 110 5.27e+01 a.1.1.4 72890 1xttA 216 5.29e+01 1nr0A 611 5.31e+01 b.69.4.1,b.69.4.1 86078,86079 2nlrA 234 5.31e+01 2nlrA b.29.1.11 24344 1t6cA 315 5.32e+01 c.55.1.8,c.55.1.8 106558,106559 1e8gA 560 5.33e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 1ri6A 343 5.35e+01 b.69.11.1 97503 1g1kA 143 5.39e+01 1aohA b.2.2.2 22404 1shyB 551 5.46e+01 b.69.12.1,g.16.2.1 105565,105566 1j1yA 136 5.49e+01 d.38.1.5 90776 1elvA 333 5.59e+01 5ptp b.47.1.2,g.18.1.1 59454,59455 1knmA 130 5.65e+01 b.42.2.1 72781 1mp9A 198 5.68e+01 d.129.1.1,d.129.1.1 91385,91386 1ftrA 296 5.74e+01 1ftrA d.58.33.1,d.58.33.1 39485,39486 1ton 235 5.80e+01 5ptp b.47.1.2 26307 1ewfA 456 5.80e+01 1bp1 d.83.1.1,d.83.1.1 40024,40025 1js8A 394 5.81e+01 a.86.1.1,b.112.1.1 67219,67220 1mixA 206 6.01e+01 a.11.2.1,b.55.1.5 79166,79167 1ca1 370 6.02e+01 1ca1 a.124.1.1,b.12.1.3 19340,23648 2gf9A 189 6.03e+01 1ubkL 534 6.15e+01 e.18.1.1 88422 1oxdA 227 6.17e+01 d.22.1.1 93687 1jfrA 262 6.26e+01 1jfrA c.69.1.16 34724 1lm8V 160 6.35e+01 b.3.3.1 74035 1qwkA 317 6.35e+01 c.1.7.1 96482 1jihA 531 6.38e+01 d.240.1.1,e.8.1.7 90374,90375 1acc 735 6.40e+01 1acc f.11.1.1 43828 1sg6A 393 6.44e+01 e.22.1.1 105522 1ejeA 192 6.58e+01 1ejeA b.45.1.2 25757 1mxmA 254 6.60e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 1mi3A 322 6.62e+01 c.1.7.1 91274 1dpjA 329 6.63e+01 1smrA b.50.1.2 26828 1e5pA 151 6.68e+01 1bj7 b.60.1.1 59272 1kshB 152 6.72e+01 b.1.18.8 72915 1evlA 401 6.73e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1h2eA 207 6.78e+01 c.60.1.1 70857 1rqwA 207 6.82e+01 b.25.1.1 97781 1h65A 270 6.84e+01 c.37.1.8 65640 1ej8A 140 6.85e+01 1qupA b.1.8.1 22300 1aly 146 6.85e+01 1aly b.22.1.1 23856 1h2kA 349 6.91e+01 b.82.2.6 76572 1cl8A 276 6.96e+01 1ckqA c.52.1.1 33230 1bg6 359 7.01e+01 1bg6 a.100.1.5,c.2.1.6 18810,30214 1ikpA 613 7.02e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1r5eA 115 7.06e+01 1tt8A 164 7.09e+01 1ng2A 193 7.15e+01 b.34.2.1,b.34.2.1 85660,85661 1jae 471 7.16e+01 1smd b.71.1.1,c.1.8.1 27773,28760 1r44A 202 7.17e+01 d.65.1.4 104787 1e2wA 251 7.20e+01 1hcz b.2.6.1,b.84.2.2 22466,28252 1jbiA 100 7.28e+01 d.209.1.1 66481 1uf5A 303 7.33e+01 d.160.1.2 107808 1on3A 523 7.33e+01 c.14.1.4,c.14.1.4 87107,87108 1otgA 125 7.41e+01 1otgA d.80.1.2 39831 1d5rA 324 7.49e+01 1d5rA b.7.1.1,c.45.1.1 23181,32697 1w6uA 302 7.51e+01 1bia 321 7.65e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1es9A 232 7.70e+01 1wab c.23.10.3 31340 1j0hA 588 7.70e+01 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1izmA 184 7.71e+01 a.199.1.1 90725 1czfA 362 7.72e+01 1czfA b.80.1.3 28031 1kmtA 141 7.73e+01 b.1.18.8 77442 1yc9A 442 7.78e+01 1g291 372 7.89e+01 1g291 1hfuA 503 7.89e+01 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 1e42A 258 7.96e+01 1e42A b.1.10.1,d.105.1.1 22316,40792 1oo0A 147 8.03e+01 d.232.1.1 87182 1k7hA 476 8.16e+01 c.76.1.1 72101 1n0uA 842 8.17e+01 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 79757,79758,79759,79760,79761 1nowA 507 8.18e+01 c.1.8.6,d.92.2.1 85936,85937 1n7vA 555 8.29e+01 b.126.1.1 85377 1jjtA 228 8.33e+01 1a7tA d.157.1.1 63139 1o97D 320 8.36e+01 c.26.2.3,c.31.1.2 81233,81234 1qjtA 99 8.39e+01 1eh2 a.39.1.6 17335 1b6a 478 8.41e+01 1bn5 a.4.5.25,d.127.1.1 16223,41160 1pjxA 314 8.46e+01 b.68.6.1 104167 1q15A 503 8.51e+01 c.26.2.1,d.153.1.1 95538,95539 1m2tA 254 8.60e+01 d.165.1.1 84761 1b65A 375 8.62e+01 1b65A d.154.1.1 42020 1ttwA 138 8.64e+01 d.198.1.1 107308 1vpbA 451 8.72e+01 1to6A 371 8.74e+01 c.141.1.1 107170 1t7vA 278 8.75e+01 1pg6A 243 8.77e+01 b.82.5.2 94673 1erjA 393 8.77e+01 1erjA b.69.4.1 27660 1p5zB 263 8.83e+01 c.37.1.1 87815 1shwB 181 8.93e+01 b.18.1.4 105563