# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gkeA 274 6.94e-05 1gqzA 274 1.30e-04 d.21.1.1,d.21.1.1 83311,83312 1bwzA 274 2.24e-04 1bwzA d.21.1.1,d.21.1.1 38337,38338 1w61A 414 5.11e-03 1tm0A 350 2.08e-01 d.21.1.3 107147 1t6kA 278 7.79e-01 1u1wA 298 1.00e+00 1xubA 298 1.03e+00 1sdjA 310 1.83e+00 d.21.1.2,d.21.1.2 98807,98808 1ym5A 300 1.93e+00 1o0pA 104 2.02e+00 d.58.7.1 86535 1oe4A 247 2.41e+00 c.18.1.3 86895 1pzgA 331 4.57e+00 c.2.1.5,d.162.1.1 95425,95426 1s5jA 847 7.11e+00 1soxA 466 8.05e+00 1soxA b.1.18.6,d.120.1.1,d.176.1.1 21947,41090,42563 1ac5 483 9.17e+00 1ac5 c.69.1.5 34653 2cxcA 144 9.52e+00 1zowA 313 1.03e+01 1souA 194 1.18e+01 c.124.1.6 105858 1d0iA 156 1.18e+01 2dhqA c.23.13.1 31383 1mpp 361 1.20e+01 2rmpA b.50.1.2 26856 1gtzA 156 1.21e+01 c.23.13.1 70539 2azpA 318 1.29e+01 1vr3A 191 1.42e+01 1dlwA 116 1.43e+01 1dlyA a.1.1.1 14982 1kkoA 413 1.45e+01 c.1.11.2,d.54.1.1 68675,68676 2awaA 390 1.45e+01 1sr8A 298 1.46e+01 e.54.1.1 105959 2b3nA 159 1.63e+01 1x1nA 524 1.64e+01 1ep3B 262 1.66e+01 1ep2B b.43.4.2,c.25.1.3 25664,31554 1n25A 368 1.83e+01 c.37.1.20 85264 1qyaA 307 2.07e+01 d.21.1.2,d.21.1.2 104653,104654 1khbA 625 2.11e+01 c.91.1.1,c.109.1.1 68606,68607 1r61A 207 2.21e+01 c.8.8.1 97138 1xd8A 289 2.25e+01 2av4A 162 2.52e+01 1s7jA 262 2.52e+01 d.21.1.2 98647 1nscA 390 2.55e+01 2qwc b.68.1.1 27591 1qd1A 325 2.63e+01 1qd1A d.58.34.1,d.58.34.1 39493,39494 1wybA 392 2.94e+01 1om4A 422 3.15e+01 d.174.1.1 87067 1pgyA 47 3.18e+01 a.5.2.1 94696 1ak0 270 3.36e+01 1ak0 a.124.1.2 19345 2cr4A 126 3.45e+01 2avdA 219 3.47e+01 2bw0A 329 3.55e+01 1lqaA 346 3.57e+01 c.1.7.1 84674 1cp2A 269 3.57e+01 1cp2A c.37.1.10 32269 1mvwA 840 3.58e+01 i.15.1.1 79523 1to6A 371 3.89e+01 c.141.1.1 107170 1eudA 311 3.90e+01 2scuA c.2.1.8,c.23.4.1 30312,31140 1xhkA 187 3.95e+01 1qgvA 142 3.97e+01 1qgvA c.47.1.8 33056 1ixlA 131 4.11e+01 d.38.1.5 90717 2gsq 202 4.12e+01 1pd21 a.45.1.1,c.47.1.5 17715,33009 1wycA 392 4.21e+01 1ufbA 127 4.22e+01 a.24.16.3 99331 1s4iA 175 4.43e+01 1uurA 473 4.54e+01 a.47.1.1,b.2.5.5,d.93.1.1 100016,100017,100018 2madH 373 4.59e+01 2bbkH b.69.2.1 27639 2bvbA 137 4.66e+01 1yqzA 438 4.81e+01 1hnjA 317 4.82e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 1oi7A 288 4.91e+01 c.2.1.8,c.23.4.1 87049,87050 1qhkA 47 5.26e+01 1qhkA d.100.1.2 40694 1g2iA 166 5.32e+01 1g2iA c.23.16.2 31438 1vljA 407 5.37e+01 e.22.1.2 108832 1moq 368 5.44e+01 1moq c.80.1.1 35302 1q6uA 245 5.53e+01 d.26.1.1 95998 1vk1A 242 5.59e+01 d.268.1.2 108634 1xjvA 294 5.64e+01 1dosA 358 5.79e+01 1dosA c.1.10.2 29175 1ht6A 405 5.85e+01 b.71.1.1,c.1.8.1 83629,83630 1orrA 347 5.90e+01 c.2.1.2 93460 1xzpB 150 5.99e+01 1u84A 90 5.99e+01 1jjiA 311 6.07e+01 c.69.1.2 66766 1yzhA 214 6.15e+01 1ut8A 291 6.18e+01 a.60.7.1,c.120.1.2 99908,99909 2gjgA 248 6.19e+01 1f24A 402 6.22e+01 1rom a.104.1.1 18953 1prxA 224 6.26e+01 1prxA c.47.1.10 33076 1hg8A 349 6.27e+01 b.80.1.3 65830 2a6tA 271 6.44e+01 1nf2A 268 6.45e+01 c.108.1.10 91849 1zmdA 474 6.64e+01 1nmoA 247 6.68e+01 c.135.1.1 91980 1mmvB 419 6.72e+01 d.174.1.1 91318 1gv3A 248 6.77e+01 a.2.11.1,d.44.1.1 70585,70586 1ycoA 279 6.81e+01 1mkiA 330 6.88e+01 e.3.1.2 84994 1xo1A 291 6.91e+01 1exnA a.60.7.1,c.120.1.2 18086,33356 1svmA 377 6.91e+01 1quuA 250 7.06e+01 1quuA a.7.1.1,a.7.1.1 16320,16321 1m6eX 359 7.09e+01 c.66.1.35 91188 1f6fA 199 7.15e+01 1f6fA a.26.1.1 16839 1y3nA 490 7.17e+01 1izmA 184 7.21e+01 a.199.1.1 90725 1h21A 247 7.33e+01 a.138.1.3 76510 2g6yA 217 7.38e+01 1wdkC 390 7.45e+01 c.95.1.1,c.95.1.1 109258,109259 2bl9A 238 7.46e+01 1jj2F 119 7.46e+01 1ffkE d.79.3.1 63091 1e5eA 404 7.50e+01 1ibjA c.67.1.3 59265 2g09A 297 7.53e+01 1jb3A 131 7.54e+01 1jc7A b.40.3.2 62833 2ewrA 170 7.55e+01 1jfbA 404 7.83e+01 a.104.1.1 66624 2blcA 238 8.03e+01 1wvfA 520 8.14e+01 1jopA 155 8.34e+01 b.82.2.7 84187 1gvhA 396 8.40e+01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 2b1xA 470 8.43e+01 1y9kA 157 8.49e+01 1y8aA 332 8.50e+01 2b0tA 738 8.57e+01 2b59B 172 8.68e+01 2anuA 255 8.69e+01