Best Alignments for T0301

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2gkeA/T0301-2gkeA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gkeA/T0301-2gkeA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.4852e-021.17e-20
1gqzA/T0301-1gqzA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gqzA/T0301-1gqzA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3319e-012.87e-18 d.21.1.1
d.21.1.1
1w61A/T0301-1w61A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1w61A/T0301-1w61A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4718e-011.01e-18
1sdjA/T0301-1sdjA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1sdjA/T0301-1sdjA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1591e+002.65e-13 d.21.1.2
d.21.1.2
1xubA/T0301-1xubA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xubA/T0301-1xubA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.3846e+004.41e-12
1tm0A/T0301-1tm0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1tm0A/T0301-1tm0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3128e+012.34e-10 d.21.1.3
1u1wA/T0301-1u1wA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1u1wA/T0301-1u1wA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.1056e+011.82e-11
2azpA/T0301-2azpA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2azpA/T0301-2azpA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.2199e+012.41e-10
1lm4A/T0301-1lm4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1lm4A/T0301-1lm4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.2871e+011.88e-10 d.167.1.1
1s7jA/T0301-1s7jA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1s7jA/T0301-1s7jA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.5556e+011.17e-09 d.21.1.2

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001