Best Alignments for T0301

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1w61A/T0301-1w61A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1w61A/T0301-1w61A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.3580e-021.01e-18
2gkeA/T0301-2gkeA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gkeA/T0301-2gkeA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.6531e-021.17e-20
1gqzA/T0301-1gqzA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gqzA/T0301-1gqzA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5484e-012.87e-18 d.21.1.1
d.21.1.1
1sdjA/T0301-1sdjA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1sdjA/T0301-1sdjA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.7400e+002.65e-13 d.21.1.2
d.21.1.2
1tm0A/T0301-1tm0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1tm0A/T0301-1tm0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.9195e+001.61e-09 d.21.1.3
2azpA/T0301-2azpA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2azpA/T0301-2azpA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.6929e+003.37e-10
1xubA/T0301-1xubA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xubA/T0301-1xubA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.9385e+003.21e-10
1u1wA/T0301-1u1wA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1u1wA/T0301-1u1wA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.8024e+008.75e-10
1t6kA/T0301-1t6kA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1t6kA/T0301-1t6kA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2207e+019.66e-09
1ci3M/T0301-1ci3M-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ci3M/T0301-1ci3M-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.6902e+013.58e-07 1hcz b.2.6.1
b.84.2.2

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001