# List of top-scoring protein chains for t2k-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1w61A 414 4.31e-02 1gqzA 274 9.23e-02 d.21.1.1,d.21.1.1 83311,83312 1bwzA 274 2.17e-01 1bwzA d.21.1.1,d.21.1.1 38337,38338 2gkeA 274 3.76e-01 1tm0A 350 5.43e-01 d.21.1.3 107147 1a6l 106 8.74e-01 1a6l d.58.1.2 38966 1fd2 106 9.08e-01 1a6l d.58.1.2 38962 1b0tA 106 9.19e-01 1a6l d.58.1.2 38965 1lj5A 379 3.23e+00 e.1.1.1 73928 1l1nA 183 3.50e+00 b.47.1.4 73476 7fd1A 106 3.84e+00 1a6l d.58.1.2 38953 1mkeA 152 4.37e+00 b.55.1.4 79231 1usyA 275 4.69e+00 1k12A 158 4.98e+00 b.18.1.15 71978 1yqzA 438 8.05e+00 1lf6A 684 8.09e+00 a.102.1.5,b.30.5.5 77918,77919 1q47A 495 8.37e+00 b.69.12.1 104532 2bukA 196 8.55e+00 2stv 195 8.55e+00 2stv b.121.7.1 23287 1s7jA 262 8.63e+00 d.21.1.2 98647 1sdjA 310 8.98e+00 d.21.1.2,d.21.1.2 98807,98808 1vcbC 160 1.06e+01 1vcbC b.3.3.1 22535 1fdd 106 1.14e+01 1a6l d.58.1.2 38960 1lqbC 162 1.18e+01 b.3.3.1 74186 1lm8V 160 1.18e+01 b.3.3.1 74035 1ioaA 240 1.19e+01 1led b.29.1.1 24168 2pcfB 250 1.30e+01 1hcz i.4.1.1 45911 1a7cA 379 1.31e+01 1sek e.1.1.1 42660 2azpA 318 1.41e+01 1hcz 252 1.42e+01 1hcz b.2.6.1,b.84.2.2 22464,28250 2sak 121 1.47e+01 2sak d.15.5.1 37711 1eysH 259 1.48e+01 6prcH b.41.1.1,f.23.10.1 25484,43517 1eft 405 1.65e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25688,25728,32123 1xs1A 193 1.70e+01 2bjrA 368 1.74e+01 1fjgL 135 1.79e+01 1fjfL b.40.4.5 25346 1lmhA 184 1.92e+01 d.167.1.1 74036 2bz1A 196 1.93e+01 1avbA 226 1.95e+01 1led b.29.1.1 24158 1lm4A 194 1.97e+01 d.167.1.1 84626 2g6yA 217 1.98e+01 2bjqA 345 2.07e+01 1b0vA 106 2.09e+01 1a6l d.58.1.2 38982 1v54F 98 2.13e+01 g.41.5.3 100327 1qyaA 307 2.33e+01 d.21.1.2,d.21.1.2 104653,104654 1mixA 206 2.37e+01 a.11.2.1,b.55.1.5 79166,79167 1db2A 377 2.49e+01 1sek e.1.1.1 42672 2gc9A 179 2.52e+01 2occF 98 2.60e+01 2occF g.41.5.3 45256 1hka 158 2.61e+01 1hka d.58.30.1 39433 1pbyA 489 2.66e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 94417,94418,94419,94420,94421 1viwB 198 2.68e+01 1led b.29.1.1 24170 1suwA 249 2.73e+01 e.52.1.1 106027 1z0sA 278 2.77e+01 1jjuA 489 2.85e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66774,66775,66776,66777,66778 1v10A 521 2.96e+01 b.6.1.3,b.6.1.3,b.6.1.3 108224,108225,108226 1f3yA 165 3.09e+01 d.113.1.1 59635 1d3bA 75 3.10e+01 1d3bA b.38.1.1 24798 1ju3A 583 3.10e+01 b.18.1.13,c.69.1.21 67300,67301 1kfiA 572 3.26e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68555,68556,68557,68558 1yqfA 203 3.44e+01 1e42A 258 3.51e+01 1e42A b.1.10.1,d.105.1.1 22316,40792 1xubA 298 3.55e+01 1ejxC 567 3.60e+01 b.92.1.1,c.1.9.2 83184,83185 1lqwA 183 3.62e+01 d.167.1.1 74210 1ejrC 567 3.63e+01 1ubpC b.92.1.1,c.1.9.2 28420,29042 1fwcC 567 3.64e+01 1ubpC b.92.1.1,c.1.9.2 28410,29032 1a5lC 566 3.64e+01 1ubpC b.92.1.1,c.1.9.2 28426,29048 1a5mC 566 3.77e+01 1ubpC b.92.1.1,c.1.9.2 28423,29045 1a5kC 566 3.79e+01 1ubpC b.92.1.1,c.1.9.2 28425,29047 1qhqA 140 3.84e+01 1qhqA b.6.1.1 63326 1u2hA 99 3.96e+01 1qhhD 169 3.99e+01 1pjr 2ghsA 326 4.08e+01 2cxkA 95 4.09e+01 1b65A 375 4.13e+01 1b65A d.154.1.1 42020 1kk1A 410 4.18e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1mqoA 227 4.43e+01 d.157.1.1 103846 2a6vA 226 4.65e+01 2bypA 214 4.71e+01 1xoyA 161 4.75e+01 1pyiA 96 4.79e+01 1pyiA g.38.1.1,h.1.3.1 45079,45512 1fa8A 135 4.90e+01 1qipA d.32.1.1 38486 1ccr 112 4.94e+01 1ycc a.3.1.1 15877 1ov3A 138 5.03e+01 b.34.2.1,b.34.2.1 87451,87452 1wkyA 464 5.03e+01 2pflA 759 5.09e+01 1cm5A c.7.1.1 30675 1exmA 405 5.16e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 2dddA 225 5.19e+01 1cm5A 759 5.19e+01 1cm5A c.7.1.1 30671 1qwtA 255 5.25e+01 b.26.1.3 96501 3pflA 759 5.29e+01 1cm5A c.7.1.1 30673 2g30A 258 5.37e+01 1otgA 125 5.50e+01 1otgA d.80.1.2 39831 1n26A 325 5.54e+01 b.1.1.4,b.1.2.1,b.1.2.1 79850,79851,79852 2bbvC 363 5.66e+01 2bbvA b.121.4.4 23325 1djxA 624 5.79e+01 1djxB a.39.1.7,b.7.1.1,c.1.18.1 17342,23159,29587 1g86A 142 5.96e+01 b.29.1.3 70161 1f9zA 135 5.97e+01 1qipA d.32.1.1 38484 1rz3A 201 6.05e+01 c.37.1.6 98132 1v7wA 807 6.09e+01 a.102.1.4,b.30.5.3 108411,108412 1hdkA 141 6.13e+01 b.29.1.3 65807 1wgoA 123 6.16e+01 1f9yA 158 6.18e+01 d.58.30.1 83249 2c78A 405 6.18e+01 1xyfA 436 6.20e+01 1taxA b.42.2.1,c.1.8.3 25577,28909 1stzA 338 6.31e+01 a.4.5.51,d.110.2.3 106009,106010 1z94A 147 6.35e+01 1l5jA 865 6.69e+01 a.118.15.1,c.8.2.1,c.83.1.1 73592,73593,73594 1dhkB 223 6.86e+01 1led b.29.1.1 24157 1i7hA 111 6.88e+01 d.15.4.1 71122 1x3mA 415 6.90e+01 1u1wA 298 6.93e+01 1oivA 191 7.00e+01 c.37.1.8 93076 2bvlA 543 7.00e+01 1lcl 142 7.04e+01 1lcl b.29.1.3 24216 1ng2A 193 7.06e+01 b.34.2.1,b.34.2.1 85660,85661 1ds6B 180 7.16e+01 1rhoA b.1.18.8 21898 1bihA 395 7.18e+01 1bihA b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4 21752,21753,21754,21755 1n9pA 207 7.21e+01 b.1.18.16 80343 2cxvA 219 7.22e+01 1ha3A 405 7.27e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 60869,60870,60871 1om0A 274 7.28e+01 c.1.8.5 87058 1ta3A 274 7.29e+01 c.1.8.5 106731 1n3gA 113 7.29e+01 d.204.1.1 79962 1rec 201 7.36e+01 1rec a.39.1.5 17326 1havA 217 7.36e+01 1havA b.47.1.4 26423 1eqoA 158 7.45e+01 1hka 1pb1A 416 7.60e+01 c.77.1.1 88014 1wb9A 800 7.61e+01 1ev7A 317 7.62e+01 1ev7B c.52.1.9 33315 1umzA 278 7.69e+01 b.29.1.2 99639 1ax0 239 7.69e+01 1led b.29.1.1 24042 1ab0 131 7.81e+01 1hmt b.60.1.2 27190 1qwdA 177 7.90e+01 b.60.1.1 96471 1axj 122 7.99e+01 1axj b.45.1.1 25749 1ckmA 330 8.03e+01 1ckmA b.40.4.6,d.142.2.3 25358,41585 7odcA 424 8.12e+01 7odcA b.49.2.3,c.1.6.1 26488,28650 1e4eA 343 8.27e+01 1iow c.30.1.2,d.142.1.1 59221,59222 1p7hL 286 8.66e+01 b.1.18.1,b.2.5.3 94271,94272 1d2gA 292 8.66e+01 1xvaA c.66.1.5 34187 1mo9A 523 8.82e+01 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 2bynA 227 8.91e+01 1g72A 573 8.92e+01 4aahA b.70.1.1 27680 1qa7B 217 8.98e+01 1havA b.47.1.4 26426