# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1w61A 414 5.52e-03 1bwzA 274 1.38e-01 1bwzA d.21.1.1,d.21.1.1 38337,38338 2gkeA 274 1.39e-01 1gqzA 274 1.74e-01 d.21.1.1,d.21.1.1 83311,83312 1mkeA 152 1.23e+00 b.55.1.4 79231 1pyiA 96 3.06e+00 1pyiA g.38.1.1,h.1.3.1 45079,45512 1tm0A 350 3.36e+00 d.21.1.3 107147 1sdjA 310 3.94e+00 d.21.1.2,d.21.1.2 98807,98808 1s7jA 262 6.29e+00 d.21.1.2 98647 2cxkA 95 8.91e+00 1qyaA 307 1.05e+01 d.21.1.2,d.21.1.2 104653,104654 1igtB 444 1.25e+01 1igtB b.1.1.1,b.1.1.2,b.1.1.2,b.1.1.2 19765,20867,20868,20869 1eft 405 1.34e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25688,25728,32123 1ioaA 240 1.37e+01 1led b.29.1.1 24168 1yqfA 203 1.39e+01 1a6l 106 1.42e+01 1a6l d.58.1.2 38966 1b0tA 106 1.43e+01 1a6l d.58.1.2 38965 1usyA 275 1.55e+01 2g6yA 217 1.69e+01 2azpA 318 1.72e+01 1ty9A 222 1.79e+01 1s6lA 212 1.81e+01 1qatB 622 2.06e+01 1djxB a.39.1.7,b.7.1.1,c.1.18.1 17355,23172,29600 1eysH 259 2.07e+01 6prcH b.41.1.1,f.23.10.1 25484,43517 1ci3M 249 2.22e+01 1hcz b.2.6.1,b.84.2.2 22480,28266 1zynA 202 2.27e+01 1bk0 331 2.28e+01 1bk0 b.82.2.1 28118 1odmA 331 2.28e+01 b.82.2.1 86875 1hhsA 664 2.29e+01 1hi0P e.8.1.6 61045 1hcz 252 2.49e+01 1hcz b.2.6.1,b.84.2.2 22464,28250 1lj5A 379 2.50e+01 e.1.1.1 73928 1l5jA 865 2.51e+01 a.118.15.1,c.8.2.1,c.83.1.1 73592,73593,73594 1qasA 622 2.59e+01 1djxB a.39.1.7,b.7.1.1,c.1.18.1 17340,23157,29585 1e2wA 251 2.62e+01 1hcz b.2.6.1,b.84.2.2 22466,28252 1yqzA 438 2.75e+01 1n26A 325 2.88e+01 b.1.1.4,b.1.2.1,b.1.2.1 79850,79851,79852 1k12A 158 2.96e+01 b.18.1.15 71978 1lmhA 184 3.03e+01 d.167.1.1 74036 1l1nA 183 3.19e+01 b.47.1.4 73476 1lqbC 162 3.20e+01 b.3.3.1 74186 1uvjA 664 3.23e+01 e.8.1.6 100045 2ajtA 500 3.28e+01 1ut9A 609 3.35e+01 a.102.1.2,b.1.18.2 99912,99913 1eqoA 158 3.46e+01 1hka 1f9yA 158 3.46e+01 d.58.30.1 83249 1vcbC 160 3.49e+01 1vcbC b.3.3.1 22535 1xubA 298 3.50e+01 1mixA 206 3.59e+01 a.11.2.1,b.55.1.5 79166,79167 1xqbA 247 3.80e+01 1kk1A 410 3.94e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1ju3A 583 3.96e+01 b.18.1.13,c.69.1.21 67300,67301 2f6uA 234 4.05e+01 1rl6A 177 4.14e+01 1rl6A d.141.1.1,d.141.1.1 41473,41474 1mek 120 4.16e+01 1erv c.47.1.2 32775 1hka 158 4.28e+01 1hka d.58.30.1 39433 1fd2 106 4.30e+01 1a6l d.58.1.2 38962 2bjqA 345 4.31e+01 1fdd 106 4.34e+01 1a6l d.58.1.2 38960 1lm8V 160 4.35e+01 b.3.3.1 74035 1u1wA 298 4.49e+01 1f76A 336 4.51e+01 c.1.4.1 76160 1igtD 444 4.56e+01 1igtB b.1.1.1,b.1.1.2,b.1.1.2,b.1.1.2 19767,20871,20872,20873 1lm4A 194 4.64e+01 d.167.1.1 84626 7fd1A 106 4.65e+01 1a6l d.58.1.2 38953 1hyuA 521 4.82e+01 1hyuA c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1ds6B 180 5.11e+01 1rhoA b.1.18.8 21898 1e4eA 343 5.38e+01 1iow c.30.1.2,d.142.1.1 59221,59222 2pcfB 250 5.48e+01 1hcz i.4.1.1 45911 1oivA 191 5.64e+01 c.37.1.8 93076 1bihA 395 5.68e+01 1bihA b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4 21752,21753,21754,21755 1wkyA 464 5.80e+01 2arzA 247 5.94e+01 1oixA 191 6.06e+01 2gc9A 179 6.36e+01 1cwvA 492 6.38e+01 1cwvA b.1.14.1,b.1.14.1,b.1.14.1,b.1.14.1,d.169.1.3 22373,22374,22375,22376,42442 1qupA 222 6.40e+01 1qupA b.1.8.1,d.58.17.1 22301,39352 1u5tC 202 6.47e+01 a.4.5.54,a.4.5.54 107688,107689 1ap8 213 6.51e+01 1ap8 d.86.1.1 40151 1pbyA 489 6.67e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 94417,94418,94419,94420,94421 2fomB 185 6.69e+01 1lqwA 183 6.82e+01 d.167.1.1 74210 1wgoA 123 6.87e+01 1t6kA 278 6.90e+01 2bvlA 543 6.94e+01 1z7wA 322 6.98e+01 1jjuA 489 7.11e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66774,66775,66776,66777,66778 1sjwA 144 7.21e+01 d.17.4.9 98899 2aieP 203 7.24e+01 2cbiA 594 7.24e+01 1mqoA 227 7.25e+01 d.157.1.1 103846 1y43A 39 7.26e+01 1js8A 394 7.31e+01 a.86.1.1,b.112.1.1 67219,67220 2c6cA 707 7.36e+01 2f7fA 494 7.42e+01 1z7yA 322 7.46e+01 1ri7A 171 7.49e+01 a.4.5.32,d.58.4.2 97504,97505 2c78A 405 7.52e+01 1tme3 236 7.86e+01 1qqp3 1lf6A 684 7.89e+01 a.102.1.5,b.30.5.5 77918,77919 1f15A 218 7.89e+01 1f15B b.121.4.5 23320 1q47A 495 7.96e+01 b.69.12.1 104532 1ats 386 8.08e+01 1ba1 c.55.1.1,c.55.1.1 33423,33424 1lm6A 215 8.44e+01 d.167.1.1 84628 1exmA 405 8.45e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 1xoyA 161 8.64e+01 1f3yA 165 8.67e+01 d.113.1.1 59635 1suwA 249 8.80e+01 e.52.1.1 106027