# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gkeA 274 2.52e-02 1gqzA 274 5.47e-02 d.21.1.1,d.21.1.1 83311,83312 1bwzA 274 5.61e-02 1bwzA d.21.1.1,d.21.1.1 38337,38338 1w61A 414 3.87e-01 1sdjA 310 2.24e+00 d.21.1.2,d.21.1.2 98807,98808 1qyaA 307 4.24e+00 d.21.1.2,d.21.1.2 104653,104654 1h21A 247 4.87e+00 a.138.1.3 76510 1f0jA 377 7.18e+00 1f0jA a.211.1.2 19346 1xubA 298 7.59e+00 1u1wA 298 9.19e+00 1t6kA 278 1.02e+01 2fbeA 201 1.13e+01 2cr4A 126 1.46e+01 1ak0 270 1.56e+01 1ak0 a.124.1.2 19345 1q7zA 566 1.63e+01 c.1.21.2,c.1.26.1 96090,96091 1ri7A 171 1.89e+01 a.4.5.32,d.58.4.2 97504,97505 1i2sA 282 1.90e+01 e.3.1.1 71104 1nc5A 373 1.90e+01 a.102.1.6 85548 1v5vA 401 2.04e+01 1wz8A 264 2.13e+01 1iapA 211 2.23e+01 a.91.1.1 62119 4blmA 265 2.27e+01 1btl e.3.1.1 42721 1kyhA 276 2.34e+01 c.72.1.4 73222 1xorA 349 2.47e+01 1uk8A 282 2.65e+01 c.69.1.10 107907 1tbbA 332 2.72e+01 a.211.1.2 106741 1c0eA 157 2.93e+01 1dg9A c.44.1.1 32638 1y2kA 349 3.02e+01 1mkeA 152 3.08e+01 b.55.1.4 79231 1iupA 282 3.30e+01 c.69.1.10 76815 1c44A 123 3.63e+01 1qndA d.106.1.1 40795 1vk3A 615 3.71e+01 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 2g6yA 217 4.22e+01 1ap8 213 4.37e+01 1ap8 d.86.1.1 40151 1z5bA 469 4.38e+01 1h16A 759 4.53e+01 c.7.1.1 76462 2a7kA 250 4.74e+01 3pflA 759 5.04e+01 1cm5A c.7.1.1 30673 1xvxA 312 5.14e+01 1y0gA 191 5.16e+01 1s7jA 262 5.20e+01 d.21.1.2 98647 1cm5A 759 5.32e+01 1cm5A c.7.1.1 30671 2pflA 759 5.40e+01 1cm5A c.7.1.1 30675 1o04A 500 5.40e+01 c.82.1.1 86508 1q2yA 140 5.40e+01 d.108.1.1 95655 1zowA 313 5.78e+01 2cw8A 537 5.84e+01 1grvB 182 6.09e+01 c.61.1.1 76322 1m6eX 359 6.11e+01 c.66.1.35 91188 1p5jA 372 6.12e+01 c.79.1.1 104067 1z0sA 278 6.13e+01 1f76A 336 6.16e+01 c.1.4.1 76160 1j79A 347 6.22e+01 1j79A c.1.9.4 62675 1xzpB 150 6.24e+01 1hhsA 664 6.57e+01 1hi0P e.8.1.6 61045 1fwcA 100 6.69e+01 1ubpA d.8.1.1 37331 2kauA 100 6.99e+01 1ubpA d.8.1.1 37335 1hi0P 664 7.08e+01 1hi0P e.8.1.6 61051 1ag8A 499 7.11e+01 1bpwA c.82.1.1 35341 1k9sA 237 7.36e+01 c.56.2.1 68359 1jb3A 131 7.45e+01 1jc7A b.40.3.2 62833 1esc 306 7.53e+01 1esc c.23.10.1 31334 1pg6A 243 7.57e+01 b.82.5.2 94673 1jenA 267 7.60e+01 1jenA 1c3qA 272 7.71e+01 1c3qA c.72.1.2 34948 1ym5A 300 7.74e+01 1ubpA 101 7.78e+01 1ubpA d.8.1.1 37353 1zr6A 503 7.86e+01 1xfjA 261 7.88e+01 d.194.1.2 109585 1gm5A 780 7.89e+01 a.24.21.1,b.40.4.9,c.37.1.19,c.37.1.19 65298,65299,65300,65301 1lvmA 229 7.92e+01 b.47.1.3 78243 1kv9A 668 7.94e+01 a.3.1.6,b.70.1.1 73056,73057 1nftA 329 7.96e+01 1nnt c.94.1.2 35881 1mplA 349 8.01e+01 e.3.1.1 79387 1hvbA 349 8.13e+01 3pte e.3.1.1 42686 1nzyA 269 8.14e+01 1nzyA c.14.1.3 30903 1uvjA 664 8.17e+01 e.8.1.6 100045 1sdeA 347 8.22e+01 1nglA 179 8.47e+01 1nglA b.60.1.1 27146 1e5mA 416 8.59e+01 1dd8A c.95.1.1,c.95.1.1 58973,58974 1wy7A 207 8.63e+01 1mlwA 301 8.67e+01 d.178.1.1 79289 1h10A 125 8.76e+01 b.55.1.1 83446 1txgA 335 8.77e+01 1x1nA 524 8.91e+01