Best Alignments for T0301

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2gkeA/T0301-2gkeA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gkeA/T0301-2gkeA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.4966e-026.16e-19
1gqzA/T0301-1gqzA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gqzA/T0301-1gqzA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.8655e-027.19e-16 d.21.1.1
d.21.1.1
1sdjA/T0301-1sdjA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1sdjA/T0301-1sdjA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.7521e-011.71e-12 d.21.1.2
d.21.1.2
1xubA/T0301-1xubA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xubA/T0301-1xubA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1187e+014.41e-12
1lm4A/T0301-1lm4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1lm4A/T0301-1lm4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.7899e+011.88e-10 d.167.1.1
1h21A/T0301-1h21A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1h21A/T0301-1h21A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.1543e+011.77e+03 a.138.1.3
1suwA/T0301-1suwA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1suwA/T0301-1suwA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.5030e+013.95e-05 e.52.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001