# List of top-scoring protein chains for T0301.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1y9kA 157 9.01e-01 2gkeA 274 9.01e+00 1h21A 247 9.76e+00 a.138.1.3 76510 1bwzA 274 1.03e+01 1bwzA d.21.1.1,d.21.1.1 38337,38338 1mblA 256 1.14e+01 1btl e.3.1.1 42723 1cp2A 269 1.15e+01 1cp2A c.37.1.10 32269 4blmA 265 1.33e+01 1btl e.3.1.1 42721 1i2sA 282 1.98e+01 e.3.1.1 71104 2rspA 124 2.03e+01 2rspB b.50.1.1 26771 1baiA 124 2.17e+01 2rspB b.50.1.1 26773 1mvpA 124 2.24e+01 2rspB b.50.1.1 26775 1f76A 336 2.29e+01 c.1.4.1 76160 1ri7A 171 2.51e+01 a.4.5.32,d.58.4.2 97504,97505 1zbpA 273 2.96e+01 1djxA 624 3.08e+01 1djxB a.39.1.7,b.7.1.1,c.1.18.1 17342,23159,29587 1qasA 622 3.08e+01 1djxB a.39.1.7,b.7.1.1,c.1.18.1 17340,23157,29585 1f3dJ 219 3.25e+01 32c2A b.1.1.1,b.1.1.2 20461,21425 2ew1A 201 3.58e+01 1e0fI 57 3.71e+01 1e0fI g.3.15.2 44377 1c17M 177 3.84e+01 1c17M f.18.1.1 43648 1ci9A 392 3.96e+01 e.3.1.1 64767 2a9bA 372 4.13e+01 2afhE 289 4.19e+01 2bs3B 239 4.20e+01 2f6uA 234 4.21e+01 2a9aA 372 4.21e+01 1soxA 466 4.24e+01 1soxA b.1.18.6,d.120.1.1,d.176.1.1 21947,41090,42563 1xfjA 261 4.26e+01 d.194.1.2 109585 1r18A 227 4.28e+01 c.66.1.7 96800 1j7jA 178 4.46e+01 c.61.1.1 84131 1atnD 260 4.56e+01 3dni d.151.1.1 41793 1oh4A 179 4.68e+01 b.18.1.18 92978 1de0A 289 4.73e+01 1cp2A c.37.1.10 32255 1y3nA 490 4.80e+01 2fq1A 287 4.90e+01 1xlqA 106 4.90e+01 1w61A 414 4.94e+01 1zz1A 369 4.99e+01 1oqqA 106 5.04e+01 d.15.4.1 93422 1ioaA 240 5.04e+01 1led b.29.1.1 24168 1r7sA 106 5.06e+01 d.15.4.1 97207 5fivA 113 5.07e+01 1fmb b.50.1.1 26765 1xd8A 289 5.09e+01 1nqbA 256 5.19e+01 1mfa b.1.1.1,b.1.1.1 20042,20043 1pdxA 106 5.32e+01 1ayfA d.15.4.1 37682 1xdbA 289 5.40e+01 1gpx 106 5.48e+01 1ayfA d.15.4.1 37681 1dlwA 116 5.50e+01 1dlyA a.1.1.1 14982 1qhkA 47 5.87e+01 1qhkA d.100.1.2 40694 2pcpA 216 5.92e+01 8fabA b.1.1.1,b.1.1.2 20370,21362 1plgL 215 6.00e+01 8fabA b.1.1.1,b.1.1.2 20080,21112 1put 106 6.11e+01 1ayfA d.15.4.1 37680 1ktrL 116 6.14e+01 b.1.1.1 72993 1axtL 216 6.15e+01 8fabA b.1.1.1,b.1.1.2 20304,21296 1s6yA 450 6.16e+01 c.2.1.5,d.162.1.2 105314,105315 1st8A 543 6.22e+01 1hixA 190 6.30e+01 b.29.1.11 65839 1fl5A 217 6.37e+01 b.1.1.1,b.1.1.2 65015,65016 1z21A 112 6.55e+01 2c3nA 247 6.65e+01 2c3qA 247 6.72e+01 1wflA 74 6.78e+01 1rw4A 272 6.82e+01 c.37.1.10 97962 1g20E 289 6.90e+01 1cp2A c.37.1.10 32247 1kynA 235 7.19e+01 b.47.1.2 73247 1ddf 127 7.40e+01 1ddf a.77.1.2 18423 2g6yA 217 7.42e+01 1kelL 217 7.47e+01 8fabA b.1.1.1,b.1.1.2 20112,21142 1qy9A 297 7.49e+01 d.21.1.2,d.21.1.2 104645,104646 1i9jL 219 7.50e+01 b.1.1.1,b.1.1.2 71146,71147 1cghA 224 7.55e+01 1a7s b.47.1.2 26290 1sdjA 310 7.55e+01 d.21.1.2,d.21.1.2 98807,98808 1qyaA 307 7.58e+01 d.21.1.2,d.21.1.2 104653,104654 1mek 120 7.68e+01 1erv c.47.1.2 32775 1igfL 219 7.82e+01 8fabA b.1.1.1,b.1.1.2 19812,20922 1o5wA 534 7.92e+01 c.3.1.2,d.16.1.5 92520,92521 1omzA 293 8.25e+01 c.68.1.15 87093 1pc2A 152 8.27e+01 a.118.8.1 94427 1fcjA 322 8.40e+01 1oasA c.79.1.1 35289 2trcP 217 8.42e+01 1b9yC c.47.1.6 33051 1d6sA 322 8.47e+01 1oasA c.79.1.1 35295 1g0uF 248 8.60e+01 d.153.1.4 41951 1uc2A 481 8.83e+01 d.261.1.1 99161 1bk8 50 8.99e+01 1ayj g.3.7.5 44178 1b9yC 246 9.00e+01 1b9yC c.47.1.6 33052