# List of top-scoring protein chains for t06-100-40-40-str2+CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gkeA 274 2.68e-03 1gqzA 274 3.49e-03 d.21.1.1,d.21.1.1 83311,83312 1xubA 298 4.40e-02 1sdjA 310 1.08e-01 d.21.1.2,d.21.1.2 98807,98808 1qyaA 307 1.15e-01 d.21.1.2,d.21.1.2 104653,104654 1p4uA 153 5.98e-01 b.1.10.2 87780 1lm4A 194 8.01e-01 d.167.1.1 84626 1hdkA 141 1.52e+00 b.29.1.3 65807 1gyvA 120 1.55e+00 b.1.10.2 70790 1lj5A 379 1.58e+00 e.1.1.1 73928 1suwA 249 1.67e+00 e.52.1.1 106027 1xeoA 168 2.20e+00 1n5nA 180 2.38e+00 d.167.1.1 85336 1b12A 248 3.14e+00 1b12A b.87.1.2 28388 1dceA 567 5.08e+00 1dceA a.118.6.1,b.7.4.1,c.10.2.2 19191,23218,30867 1cv8 174 5.17e+00 1cv8 d.3.1.1 37089 1ca1 370 5.73e+00 1ca1 a.124.1.1,b.12.1.3 19340,23648 1xe0A 114 5.85e+00 1gttA 429 6.08e+00 d.177.1.1,d.177.1.1 70529,70530 1t5rA 284 7.62e+00 f.6.1.1 106465 1oacA 727 8.44e+00 1oacA b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 2cfuA 658 8.93e+00 1feuA 206 8.96e+00 1feuA b.53.1.1 59801 1mkaA 171 9.08e+00 1mkaA d.38.1.2 38543 1cd9B 215 1.00e+01 1cto b.1.2.1,b.1.2.1 22041,22042 1e2wA 251 1.03e+01 1hcz b.2.6.1,b.84.2.2 22466,28252 1l6xA 207 1.05e+01 b.1.1.2,b.1.1.2 73642,73643 1s1dA 331 1.12e+01 b.67.3.1 98344 1q2bA 434 1.20e+01 b.29.1.10 95624 1v7wA 807 1.23e+01 a.102.1.4,b.30.5.3 108411,108412 1xodA 118 1.38e+01 1omrA 201 1.44e+01 a.39.1.5 93349 1dhkB 223 1.46e+01 1led b.29.1.1 24157 1gr3A 160 1.49e+01 b.22.1.1 65476 1qexA 288 1.52e+01 1qexA b.32.1.1 24425 1khxA 227 1.53e+01 b.26.1.1 68631 1grj 158 1.62e+01 1grj a.2.1.1,d.26.1.2 15691,38433 1kcfA 258 1.65e+01 a.140.2.1,c.55.3.7 68434,68435 1noa 113 1.68e+01 2mcm b.1.7.1 22208 1ghpA 258 1.68e+01 1btl e.3.1.1 60520 1t0qC 86 1.70e+01 d.15.12.1 106222 1cruA 454 1.78e+01 1c9uA b.68.2.1 27617 1oygA 447 1.94e+01 b.67.2.2 93726 1n9pA 207 1.95e+01 b.1.18.16 80343 1ojjA 402 1.98e+01 b.29.1.10 93130 1n2eA 300 2.06e+01 c.26.1.4 85268 1bupA 386 2.08e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 1kmtA 141 2.15e+01 b.1.18.8 77442 1cr1A 296 2.17e+01 1cr1A c.37.1.11 32286 1lr0A 129 2.18e+01 d.212.1.1 74213 1i2sA 282 2.26e+01 e.3.1.1 71104 1s14A 194 2.28e+01 d.122.1.2 98329 1vl2A 421 2.40e+01 c.26.2.1,d.210.1.1 108708,108709 1pqhA 143 2.44e+01 b.52.2.1 95017 1h4aX 173 2.48e+01 b.11.1.1,b.11.1.1 83479,83480 1gpmA 525 2.54e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2bo9B 222 2.56e+01 1y93A 159 2.57e+01 1cojA 212 2.60e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1jofA 365 2.60e+01 b.69.10.1 71775 1qwtA 255 2.62e+01 b.26.1.3 96501 1f8eA 388 2.63e+01 2qwc b.68.1.1 59694 1d3bA 75 2.69e+01 1d3bA b.38.1.1 24798 1g291 372 2.79e+01 1g291 1hl9A 449 2.92e+01 b.71.1.3,c.1.8.11 90650,90651 1bkzA 135 2.96e+01 1a3k b.29.1.3 24202 1d2sA 170 2.97e+01 1d2sA b.29.1.4 24221 1qi9A 556 3.04e+01 1qhbA a.111.1.2 19053 1nc5A 373 3.14e+01 a.102.1.6 85548 1dypA 271 3.14e+01 1dypA b.29.1.2 24185 1nlnA 204 3.18e+01 d.3.1.7 91962 1d5yA 292 3.19e+01 1d5yA a.4.1.8,a.4.1.8,d.60.1.2 16055,16056,39532 1smxA 96 3.29e+01 b.40.4.5 105772 1qmyA 167 3.38e+01 1qmyA d.3.1.2 37094 1n7eA 97 3.41e+01 b.36.1.1 91691 1m8uA 173 3.43e+01 b.11.1.1,b.11.1.1 91233,91234 1crzA 403 3.48e+01 1crzA b.68.4.1,c.51.2.1 27629,33211 1epfA 191 3.69e+01 2ncm b.1.1.4,b.1.1.4 21694,21695 1ejfA 125 3.80e+01 1ejfA b.15.1.2 23683 1eaqA 140 3.82e+01 b.2.5.6 76144 1c4rA 182 3.85e+01 1c4rA b.29.1.4 24229 1kk1A 410 3.99e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1r7lA 110 4.03e+01 d.277.1.1 104837 1vkpA 383 4.12e+01 d.126.1.6 108686 1jmsA 381 4.15e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1sgwA 214 4.17e+01 c.37.1.12 105541 1gbg 214 4.17e+01 1axkA b.29.1.2 24171 1y0yA 353 4.18e+01 1tyv 542 4.22e+01 1tyv b.80.1.6 28038 1jbwA 428 4.47e+01 c.59.1.2,c.72.2.2 62860,62861 1j1tA 233 4.61e+01 b.29.1.18 90771 1prxA 224 4.67e+01 1prxA c.47.1.10 33076 1w6sA 599 4.69e+01 1umgA 362 4.72e+01 d.280.1.1 107956 1fjgL 135 4.73e+01 1fjfL b.40.4.5 25346 1ftrA 296 4.73e+01 1ftrA d.58.33.1,d.58.33.1 39485,39486 1knvA 293 4.74e+01 c.52.1.7 68707 1qwdA 177 4.80e+01 b.60.1.1 96471 1bw3 125 4.84e+01 1bw4 b.52.1.2 26899 1ok7A 366 4.89e+01 d.131.1.1,d.131.1.1,d.131.1.1 103992,103993,103994 1khoA 370 4.90e+01 a.124.1.1,b.12.1.3 72489,72490 1n7fA 97 4.90e+01 b.36.1.1 91692 1bsg 266 4.91e+01 1btl e.3.1.1 42729 1em8B 112 4.95e+01 c.126.1.1 90458 1rjoA 646 4.99e+01 1nu0A 138 5.08e+01 c.55.3.8 92165 1jcfA 344 5.12e+01 c.55.1.1,c.55.1.1 62878,62879 1sacA 204 5.19e+01 1sacA b.29.1.5 24237 1d3cA 686 5.21e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 1jz8A 1023 5.22e+01 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1zceA 155 5.25e+01 1mldA 314 5.25e+01 2cmd c.2.1.5,d.162.1.1 30122,42089 1js8A 394 5.33e+01 a.86.1.1,b.112.1.1 67219,67220 1t0pB 86 5.34e+01 1btkA 169 5.44e+01 1btkA b.55.1.1 26959 1ikpA 613 5.44e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1g8iA 190 5.45e+01 1rec a.39.1.5 60363 1avbA 226 5.47e+01 1led b.29.1.1 24158 1mdaH 368 5.59e+01 2bbkH b.69.2.1 27637 1bu8A 452 5.68e+01 1gpl b.12.1.2,c.69.1.19 23647,34795 1sr8A 298 5.79e+01 e.54.1.1 105959 1mjuL 219 5.82e+01 b.1.1.1,b.1.1.2 91304,91305 1r3sA 367 5.82e+01 c.1.22.1 96963 1h98A 78 5.83e+01 d.58.1.2 65743 1o7eA 276 6.14e+01 e.3.1.1 92622 1s6lA 212 6.26e+01 1orvA 728 6.36e+01 b.70.3.1,c.69.1.24 87354,87355 1fuxA 166 6.40e+01 1fjjA b.17.1.2 60034 1uteA 313 6.49e+01 1uteA d.159.1.1 42078 1ry9A 145 6.51e+01 d.198.1.1 98094 1j48A 110 6.54e+01 b.1.7.1 84112 1pbuA 162 6.57e+01 d.58.46.1 88030 1n4xH 120 6.80e+01 b.1.1.1 85324 1dzlA 505 6.83e+01 1dzlA b.121.6.1 23586 1dykA 394 6.84e+01 1dykA b.29.1.4,b.29.1.4 24223,24224 1dcs 311 7.00e+01 1dcs b.82.2.1 28124 1lbvA 252 7.11e+01 e.7.1.1 73813 1ivg 388 7.14e+01 2qwc b.68.1.1 27578 1pvgA 418 7.17e+01 d.14.1.3,d.122.1.2 95161,95162 2ayh 214 7.19e+01 1axkA b.29.1.2 24172 1iq4A 179 7.21e+01 1iq4A d.77.1.1 62641 1k47A 337 7.22e+01 d.14.1.5,d.58.26.4 72040,72041 1jqlB 140 7.23e+01 c.37.1.20 63234 1wnaA 131 7.29e+01 1o91A 178 7.33e+01 b.22.1.1 92656 1dl5A 317 7.46e+01 1dl5A c.66.1.7,d.197.1.1 64720,64721 1io2A 213 7.50e+01 1ekeA c.55.3.1 62612 1erjA 393 7.51e+01 1erjA b.69.4.1 27660 1f0xA 571 7.52e+01 1f0xA d.58.32.2,d.145.1.1 39483,41746 1kdgA 546 7.62e+01 c.3.1.2,d.16.1.1 77337,77338 1r2jA 366 7.65e+01 a.29.3.1,e.6.1.1 96869,96870 1gzcA 239 7.76e+01 b.29.1.1 70803 1tdzA 272 7.76e+01 a.156.1.2,b.113.1.1,g.39.1.8 106787,106788,106789 1vp8A 201 7.77e+01 1sz7A 200 7.81e+01 1r8eA 278 7.81e+01 a.6.1.3,d.60.1.1 104843,104844 1ig0A 319 7.83e+01 1ig0A b.82.6.1,c.100.1.1 62354,62355 1my7A 114 7.83e+01 b.1.18.1 79675 1gl4B 98 7.94e+01 b.1.1.4 65288 1ncwL 219 7.95e+01 b.1.1.1,b.1.1.2 85557,85558 1g6gA 127 7.95e+01 1g6gA b.26.1.2 23916 1ok0A 74 7.97e+01 b.5.1.1 93191 1ofzA 312 7.99e+01 b.68.8.1 86978 1k82A 268 8.02e+01 a.156.1.2,b.113.1.1,g.39.1.8 75866,75867,75868 1tg0A 68 8.09e+01 1giqA 413 8.10e+01 d.166.1.1,d.166.1.1 76224,76225 1e44B 96 8.11e+01 1e44B b.101.1.1 59220 1t82A 155 8.24e+01 d.38.1.5 106639 1fonA 240 8.26e+01 5ptp b.47.1.2 26231 1cid 177 8.28e+01 1cid b.1.1.1,b.1.1.3 19740,21679 1o54A 277 8.34e+01 c.66.1.13 92482 1ckmA 330 8.37e+01 1ckmA b.40.4.6,d.142.2.3 25358,41585 1ncwH 222 8.49e+01 b.1.1.1,b.1.1.2 85555,85556 1pz7A 204 8.54e+01 b.29.1.4 95405 1oewA 329 8.59e+01 b.50.1.2 86924 1f00I 282 8.68e+01 1f00I b.1.14.1,b.1.14.1,d.169.1.3 22368,22369,42439 1qhoA 686 8.70e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 1et9A 204 8.77e+01 1an8 b.40.2.2,d.15.6.1 25204,37793 1rz3A 201 8.81e+01 c.37.1.6 98132 1uxzA 131 8.87e+01 b.18.1.10 100170