# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gkeA 274 1.50e-01 1gqzA 274 1.78e-01 d.21.1.1,d.21.1.1 83311,83312 1qyaA 307 2.13e-01 d.21.1.2,d.21.1.2 104653,104654 1sdjA 310 7.73e-01 d.21.1.2,d.21.1.2 98807,98808 1mixA 206 1.44e+00 a.11.2.1,b.55.1.5 79166,79167 1ev7A 317 1.72e+00 1ev7B c.52.1.9 33315 1qwtA 255 3.50e+00 b.26.1.3 96501 1lshA 1056 4.31e+00 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1lj5A 379 6.68e+00 e.1.1.1 73928 1f9yA 158 6.97e+00 d.58.30.1 83249 1k12A 158 7.16e+00 b.18.1.15 71978 1b5pA 385 7.65e+00 c.67.1.1 90403 1dlwA 116 9.55e+00 1dlyA a.1.1.1 14982 2sak 121 1.06e+01 2sak d.15.5.1 37711 1lf6A 684 1.11e+01 a.102.1.5,b.30.5.5 77918,77919 1rz3A 201 1.20e+01 c.37.1.6 98132 1lm8V 160 1.22e+01 b.3.3.1 74035 1mqoA 227 1.26e+01 d.157.1.1 103846 1omrA 201 1.33e+01 a.39.1.5 93349 1nvmB 312 1.38e+01 c.2.1.3,d.81.1.1 86251,86252 1fo8A 343 1.38e+01 1foaA c.68.1.10 59927 1ejxC 567 1.44e+01 b.92.1.1,c.1.9.2 83184,83185 1g7sA 594 1.49e+01 1g7rA b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 1mkaA 171 1.53e+01 1mkaA d.38.1.2 38543 1mo9A 523 1.54e+01 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1suwA 249 1.57e+01 e.52.1.1 106027 1prxA 224 1.57e+01 1prxA c.47.1.10 33076 1lm4A 194 1.58e+01 d.167.1.1 84626 1u84A 90 1.58e+01 1otgA 125 1.66e+01 1otgA d.80.1.2 39831 1r7lA 110 1.68e+01 d.277.1.1 104837 1kk1A 410 1.82e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1pzsA 208 1.99e+01 b.1.8.1 104397 1budA 197 1.99e+01 1atlA d.92.1.9 40328 1fjgL 135 2.00e+01 1fjfL b.40.4.5 25346 1ng2A 193 2.06e+01 b.34.2.1,b.34.2.1 85660,85661 1xeoA 168 2.10e+01 1v54F 98 2.18e+01 g.41.5.3 100327 1qhqA 140 2.33e+01 1qhqA b.6.1.1 63326 1reqB 637 2.89e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 1j5wA 298 2.89e+01 d.104.1.1 71589 1pbyA 489 2.96e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 94417,94418,94419,94420,94421 1xubA 298 3.06e+01 1g8iA 190 3.07e+01 1rec a.39.1.5 60363 2bjqA 345 3.24e+01 1kzqA 289 3.54e+01 b.6.2.1,b.6.2.1 73374,73375 1iarB 207 3.60e+01 1iarB b.1.2.1,b.1.2.1 22037,22038 1mknA 59 3.74e+01 1mknA g.5.1.1 44383 1g291 372 3.96e+01 1g291 1dypA 271 4.15e+01 1dypA b.29.1.2 24185 1x6zA 123 4.16e+01 1lq9A 112 4.21e+01 d.58.4.3 78129 1kxgA 152 4.22e+01 b.22.1.1 73145 1smxA 96 4.38e+01 b.40.4.5 105772 1e42A 258 4.50e+01 1e42A b.1.10.1,d.105.1.1 22316,40792 1pn2A 280 4.54e+01 d.38.1.4,d.38.1.4 94930,94931 1v58A 241 4.59e+01 c.47.1.9,d.17.3.1 108371,108372 1em8B 112 4.74e+01 c.126.1.1 90458 1ok7A 366 4.83e+01 d.131.1.1,d.131.1.1,d.131.1.1 103992,103993,103994 1n9lA 109 4.84e+01 d.110.3.6 85468 1g60A 260 4.93e+01 c.66.1.11 70151 1js8A 394 4.96e+01 a.86.1.1,b.112.1.1 67219,67220 1orrA 347 5.02e+01 c.2.1.2 93460 1pylA 97 5.03e+01 d.1.1.2 104391 1dl5A 317 5.10e+01 1dl5A c.66.1.7,d.197.1.1 64720,64721 1sz2A 332 5.17e+01 1pmhX 185 5.20e+01 b.18.1.18 104193 1qhkA 47 5.25e+01 1qhkA d.100.1.2 40694 1efnB 152 5.25e+01 1efnB d.102.1.1 40699 1tt8A 164 5.56e+01 1pqhA 143 5.72e+01 b.52.2.1 95017 1ogsA 497 5.81e+01 b.71.1.2,c.1.8.3 86997,86998 1ei7A 158 5.88e+01 1rmvA a.24.5.1 16584 1ctqA 166 6.01e+01 1ctqA c.37.1.8 31965 1ktgA 138 6.10e+01 d.113.1.1 72972 1r5mA 425 6.16e+01 1fi4A 416 6.20e+01 1fi4A d.14.1.5,d.58.26.2 59847,59848 1kcfA 258 6.23e+01 a.140.2.1,c.55.3.7 68434,68435 1qmyA 167 6.44e+01 1qmyA d.3.1.2 37094 1hf2A 210 6.50e+01 1hf2A b.80.3.1,c.102.1.1 60992,60993 2ck3G 272 6.52e+01 1ckmA 330 6.58e+01 1ckmA b.40.4.6,d.142.2.3 25358,41585 1djxA 624 6.72e+01 1djxB a.39.1.7,b.7.1.1,c.1.18.1 17342,23159,29587 1sr8A 298 6.83e+01 e.54.1.1 105959 1cuoA 129 6.89e+01 1nwpA b.6.1.1 23015 1tns 76 6.93e+01 1qpmA a.6.1.7 16228 1lr0A 129 7.00e+01 d.212.1.1 74213 1js1X 324 7.04e+01 c.78.1.1,c.78.1.1 71834,71835 1aym2 261 7.14e+01 1aym2 1h4vB 421 7.21e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 1c44A 123 7.24e+01 1qndA d.106.1.1 40795 1rzl 91 7.29e+01 1rzl a.52.1.1 17817 1feuA 206 7.43e+01 1feuA b.53.1.1 59801 1cp2A 269 7.44e+01 1cp2A c.37.1.10 32269 1sdsA 117 7.59e+01 d.79.3.1 105439 1obdA 306 7.60e+01 d.143.1.1 86767 1qwdA 177 7.68e+01 b.60.1.1 96471 1f9zA 135 7.69e+01 1qipA d.32.1.1 38484 1tuhA 156 7.69e+01 d.17.4.11 107345 1hnjA 317 7.82e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 1ca1 370 7.84e+01 1ca1 a.124.1.1,b.12.1.3 19340,23648 1fe0A 68 7.89e+01 1cc8A d.58.17.1 39345 1jbiA 100 7.89e+01 d.209.1.1 66481 1ton 235 7.91e+01 5ptp b.47.1.2 26307 1c7kA 132 7.96e+01 1kuh d.92.1.1 59078 1rypJ 204 8.07e+01 d.153.1.4 41878 1x99A 145 8.14e+01 1aop 497 8.22e+01 2aop d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 1suuA 312 8.23e+01 b.68.10.1 99006 1kuuA 202 8.26e+01 d.153.2.1 73019 1gl4B 98 8.33e+01 b.1.1.4 65288 1vk1A 242 8.33e+01 d.268.1.2 108634 1b12A 248 8.38e+01 1b12A b.87.1.2 28388 1iq6A 134 8.45e+01 d.38.1.4 76755 1dykA 394 8.62e+01 1dykA b.29.1.4,b.29.1.4 24223,24224 1o91A 178 8.84e+01 b.22.1.1 92656 1iioA 84 9.00e+01 a.39.4.1 66150