# List of top-scoring protein chains for t06-100-30-str2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gkeA 274 2.40e-02 1gqzA 274 2.74e-02 d.21.1.1,d.21.1.1 83311,83312 1sdjA 310 2.44e-01 d.21.1.2,d.21.1.2 98807,98808 1qyaA 307 9.37e-01 d.21.1.2,d.21.1.2 104653,104654 1lm4A 194 2.02e+00 d.167.1.1 84626 1mqoA 227 2.73e+00 d.157.1.1 103846 1lj5A 379 3.56e+00 e.1.1.1 73928 1omrA 201 3.70e+00 a.39.1.5 93349 1x6zA 123 4.37e+00 1prxA 224 4.74e+00 1prxA c.47.1.10 33076 1ca1 370 4.97e+00 1ca1 a.124.1.1,b.12.1.3 19340,23648 1xubA 298 5.13e+00 1d2sA 170 5.57e+00 1d2sA b.29.1.4 24221 1gyvA 120 5.76e+00 b.1.10.2 70790 1kdgA 546 6.66e+00 c.3.1.2,d.16.1.1 77337,77338 1hdkA 141 7.64e+00 b.29.1.3 65807 1gjwA 637 7.66e+00 b.71.1.1,c.1.8.1 60582,60583 1n26A 325 8.11e+00 b.1.1.4,b.1.2.1,b.1.2.1 79850,79851,79852 1lm8V 160 8.47e+00 b.3.3.1 74035 1e2wA 251 9.16e+00 1hcz b.2.6.1,b.84.2.2 22466,28252 1e42A 258 9.58e+00 1e42A b.1.10.1,d.105.1.1 22316,40792 1qexA 288 9.88e+00 1qexA b.32.1.1 24425 1ejxC 567 1.05e+01 b.92.1.1,c.1.9.2 83184,83185 1dhkB 223 1.08e+01 1led b.29.1.1 24157 1p4uA 153 1.11e+01 b.1.10.2 87780 1t0pB 86 1.14e+01 1jbwA 428 1.16e+01 c.59.1.2,c.72.2.2 62860,62861 1d3bA 75 1.22e+01 1d3bA b.38.1.1 24798 1cex 214 1.25e+01 1cex c.69.1.30 31285 1js8A 394 1.28e+01 a.86.1.1,b.112.1.1 67219,67220 1a8d 452 1.28e+01 1a8d b.29.1.6,b.42.4.2 24262,25607 1erjA 393 1.31e+01 1erjA b.69.4.1 27660 1gzcA 239 1.33e+01 b.29.1.1 70803 1qi9A 556 1.37e+01 1qhbA a.111.1.2 19053 1kk1A 410 1.38e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1qopB 396 1.41e+01 2tysB c.79.1.1 35270 1r7lA 110 1.46e+01 d.277.1.1 104837 1suwA 249 1.51e+01 e.52.1.1 106027 1m2xA 223 1.54e+01 d.157.1.1 84764 2sak 121 1.56e+01 2sak d.15.5.1 37711 1b6a 478 1.61e+01 1bn5 a.4.5.25,d.127.1.1 16223,41160 1rtu 114 1.67e+01 9rnt d.1.1.4 36139 1gr3A 160 1.68e+01 b.22.1.1 65476 1iq6A 134 1.70e+01 d.38.1.4 76755 1b12A 248 1.74e+01 1b12A b.87.1.2 28388 1v7wA 807 1.74e+01 a.102.1.4,b.30.5.3 108411,108412 1cojA 212 1.78e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1tyv 542 1.81e+01 1tyv b.80.1.6 28038 1ju3A 583 1.82e+01 b.18.1.13,c.69.1.21 67300,67301 1qwtA 255 1.88e+01 b.26.1.3 96501 1mjuL 219 1.88e+01 b.1.1.1,b.1.1.2 91304,91305 1h0hB 214 1.91e+01 d.58.1.5 76437 1sz2A 332 1.94e+01 1n9pA 207 1.95e+01 b.1.18.16 80343 1o0xA 262 2.00e+01 d.127.1.1 80755 1ev7A 317 2.05e+01 1ev7B c.52.1.9 33315 1wnaA 131 2.13e+01 1h4aX 173 2.16e+01 b.11.1.1,b.11.1.1 83479,83480 1bupA 386 2.17e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 1dykA 394 2.25e+01 1dykA b.29.1.4,b.29.1.4 24223,24224 1g291 372 2.27e+01 1g291 1mpp 361 2.27e+01 2rmpA b.50.1.2 26856 1ncwH 222 2.31e+01 b.1.1.1,b.1.1.2 85555,85556 1bg1A 722 2.36e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17767,22461,40527 1avbA 226 2.40e+01 1led b.29.1.1 24158 1xeoA 168 2.41e+01 1rz3A 201 2.50e+01 c.37.1.6 98132 2bjqA 345 2.53e+01 1qmyA 167 2.58e+01 1qmyA d.3.1.2 37094 1vk1A 242 2.58e+01 d.268.1.2 108634 1cd9B 215 2.69e+01 1cto b.1.2.1,b.1.2.1 22041,22042 1lf6A 684 2.72e+01 a.102.1.5,b.30.5.5 77918,77919 1hyvA 166 2.73e+01 1b9dA c.55.3.2 61424 1hl9A 449 2.73e+01 b.71.1.3,c.1.8.11 90650,90651 1fi4A 416 2.87e+01 1fi4A d.14.1.5,d.58.26.2 59847,59848 1n7eA 97 2.92e+01 b.36.1.1 91691 1vrmA 325 2.96e+01 1qhlA 227 2.97e+01 1qhlA c.37.1.12 32382 1nxb 62 3.00e+01 3ebx g.7.1.1 44395 1n2eA 300 3.05e+01 c.26.1.4 85268 1dceA 567 3.05e+01 1dceA a.118.6.1,b.7.4.1,c.10.2.2 19191,23218,30867 1g8iA 190 3.09e+01 1rec a.39.1.5 60363 1ok7A 366 3.12e+01 d.131.1.1,d.131.1.1,d.131.1.1 103992,103993,103994 1nlnA 204 3.12e+01 d.3.1.7 91962 1yg9A 330 3.20e+01 1yfqA 342 3.24e+01 1j1tA 233 3.27e+01 b.29.1.18 90771 1x82A 190 3.42e+01 1f9yA 158 3.51e+01 d.58.30.1 83249 1j1nA 492 3.52e+01 c.94.1.1 83978 1aym2 261 3.53e+01 1aym2 1o91A 178 3.53e+01 b.22.1.1 92656 1whi 122 3.54e+01 1whi b.39.1.1 24810 1k12A 158 3.55e+01 b.18.1.15 71978 1ncwL 219 3.56e+01 b.1.1.1,b.1.1.2 85557,85558 1o5zA 442 3.56e+01 c.59.1.2,c.72.2.2 92530,92531 1r5mA 425 3.65e+01 1v54F 98 3.73e+01 g.41.5.3 100327 1q2bA 434 3.75e+01 b.29.1.10 95624 1sdsA 117 3.90e+01 d.79.3.1 105439 1n7fA 97 3.91e+01 b.36.1.1 91692 1mp9A 198 3.94e+01 d.129.1.1,d.129.1.1 91385,91386 1u84A 90 3.97e+01 1jz8A 1023 3.97e+01 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1crzA 403 4.00e+01 1crzA b.68.4.1,c.51.2.1 27629,33211 1g4fA 86 4.08e+01 1qubA g.18.1.1 44873 1evhA 112 4.12e+01 1evhA b.55.1.4 26997 1iz6A 138 4.17e+01 b.34.5.2,b.40.4.5 76976,76977 1c4rA 182 4.18e+01 1c4rA b.29.1.4 24229 1v58A 241 4.18e+01 c.47.1.9,d.17.3.1 108371,108372 1smxA 96 4.20e+01 b.40.4.5 105772 1kmtA 141 4.21e+01 b.1.18.8 77442 1ng2A 193 4.24e+01 b.34.2.1,b.34.2.1 85660,85661 1oygA 447 4.24e+01 b.67.2.2 93726 1i1nA 226 4.26e+01 c.66.1.7 71102 1dlwA 116 4.27e+01 1dlyA a.1.1.1 14982 1cruA 454 4.33e+01 1c9uA b.68.2.1 27617 1pmhX 185 4.34e+01 b.18.1.18 104193 1ea5A 537 4.46e+01 2bce c.69.1.1 34592 1grj 158 4.52e+01 1grj a.2.1.1,d.26.1.2 15691,38433 1tbuA 118 4.56e+01 1tuhA 156 4.61e+01 d.17.4.11 107345 1b9hA 388 4.65e+01 1b9hA c.67.1.4 34488 1mo9A 523 4.70e+01 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1lr0A 129 4.74e+01 d.212.1.1 74213 1sz7A 200 4.77e+01 1a64A 97 4.78e+01 1cdcA b.1.1.1 19750 1fxlA 167 4.86e+01 1b7fA d.58.7.1,d.58.7.1 39183,39184 1bgvA 449 4.96e+01 1k89 c.2.1.7,c.58.1.1 30217,33865 1tg7A 971 5.03e+01 1iq9A 61 5.14e+01 g.7.1.1 90669 1ry9A 145 5.14e+01 d.198.1.1 98094 1nn6A 228 5.15e+01 b.47.1.2 85893 1t0qC 86 5.26e+01 d.15.12.1 106222 1vl2A 421 5.28e+01 c.26.2.1,d.210.1.1 108708,108709 2bo9B 222 5.39e+01 1fonA 240 5.41e+01 5ptp b.47.1.2 26231 1em8B 112 5.42e+01 c.126.1.1 90458 1b5pA 385 5.43e+01 c.67.1.1 90403 1qnaA 200 5.44e+01 1ytbA d.129.1.1,d.129.1.1 41226,41227 1exqA 154 5.46e+01 1b9dA c.55.3.2 33646 1bw3 125 5.47e+01 1bw4 b.52.1.2 26899 1d4xG 126 5.48e+01 1d0nA d.109.1.1 59109 1kcfA 258 5.51e+01 a.140.2.1,c.55.3.7 68434,68435 1a99A 344 5.60e+01 1pot c.94.1.1 35812 1qxyA 252 5.61e+01 d.127.1.1 96565 1w8kA 447 5.61e+01 1cv8 174 5.64e+01 1cv8 d.3.1.1 37089 1at0 145 5.72e+01 1at0 b.86.1.1 28374 1cdcA 99 5.77e+01 1cdcA b.1.1.1 19746 1tg0A 68 5.77e+01 1wy2A 351 5.80e+01 1ex0A 731 5.81e+01 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 90465,90466,90467,90468 1c7kA 132 5.84e+01 1kuh d.92.1.1 59078 1m8uA 173 5.97e+01 b.11.1.1,b.11.1.1 91233,91234 1mkaA 171 5.99e+01 1mkaA d.38.1.2 38543 1j71A 334 6.07e+01 1eagA b.50.1.2 62669 1rewC 135 6.13e+01 g.7.1.3 97336 1lq9A 112 6.15e+01 d.58.4.3 78129 1qouA 181 6.18e+01 1qouA b.17.1.1 23707 1pn2A 280 6.39e+01 d.38.1.4,d.38.1.4 94930,94931 1ixlA 131 6.43e+01 d.38.1.5 90717 1gttA 429 6.46e+01 d.177.1.1,d.177.1.1 70529,70530 1ftrA 296 6.50e+01 1ftrA d.58.33.1,d.58.33.1 39485,39486 1dmlA 319 6.63e+01 1dmlA d.131.1.2,d.131.1.2 41380,41381 1epxA 370 6.67e+01 1fbaA c.1.10.1 29150 1tq5A 242 6.67e+01 1gweA 503 6.70e+01 e.5.1.1 70667 1rurL 217 6.77e+01 b.1.1.1,b.1.1.2 97881,97882 1reqB 637 6.82e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 1oc2A 348 6.83e+01 c.2.1.2 92765 1h30A 422 6.92e+01 b.29.1.4,b.29.1.4 76604,76605 1dzkA 157 7.09e+01 1obpA b.60.1.1 27096 1xe0A 114 7.17e+01 1hmt 132 7.37e+01 1hmt b.60.1.2 27169 1c9oA 66 7.39e+01 1mjc b.40.4.5 25325 1iq4A 179 7.45e+01 1iq4A d.77.1.1 62641 1gqeA 365 7.47e+01 e.38.1.1 70351 1g1kA 143 7.55e+01 1aohA b.2.2.2 22404 1f9zA 135 7.60e+01 1qipA d.32.1.1 38484 1d7qA 143 7.61e+01 1d7qA b.40.4.5 25331 1n0zA 45 7.61e+01 g.41.11.1 85247 2ddrA 306 7.79e+01 1d02A 202 7.81e+01 1d02A c.52.1.8 33313 1rypF 233 7.84e+01 1rypF d.153.1.4 41937 1rb9 53 7.88e+01 1rb9 g.41.5.1 45214 1gpmA 525 7.91e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1jjtA 228 7.96e+01 1a7tA d.157.1.1 63139 1ijqA 316 7.98e+01 1ijqA b.68.5.1,g.3.11.1 62506,62507 1pgs 314 8.04e+01 1pgs b.121.1.1,b.121.1.1 23653,23654 1t5bA 201 8.06e+01 c.23.5.3 106433 1idrA 136 8.09e+01 1dlyA a.1.1.1 62301 1h98A 78 8.23e+01 d.58.1.2 65743 1rzl 91 8.30e+01 1rzl a.52.1.1 17817 2cfuA 658 8.30e+01 1oqjA 97 8.33e+01 d.217.1.1 93417 1nls 237 8.36e+01 1nls b.29.1.1 23928 1j48A 110 8.36e+01 b.1.7.1 84112 1dd9A 338 8.37e+01 1dd9A e.13.1.1 43254 1aba 87 8.40e+01 1aba c.47.1.1 32760 1mzgA 146 8.45e+01 d.224.1.1 79696 1x99A 145 8.52e+01 1gbg 214 8.54e+01 1axkA b.29.1.2 24171 1khoA 370 8.59e+01 a.124.1.1,b.12.1.3 72489,72490 1t5rA 284 8.60e+01 f.6.1.1 106465 1mkfA 382 8.61e+01 b.116.1.1 79232 2sli 679 8.63e+01 2sli b.29.1.9,b.68.1.1 24274,27611 1s14A 194 8.73e+01 d.122.1.2 98329 1lbvA 252 8.77e+01 e.7.1.1 73813 2ck3G 272 8.77e+01 1g7nA 131 8.80e+01 b.60.1.2 83274 1s1dA 331 8.83e+01 b.67.3.1 98344