# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gkeA 274 4.45e-02 1gqzA 274 6.92e-02 d.21.1.1,d.21.1.1 83311,83312 1sdjA 310 2.97e+00 d.21.1.2,d.21.1.2 98807,98808 1h21A 247 3.63e+00 a.138.1.3 76510 1dlwA 116 4.11e+00 1dlyA a.1.1.1 14982 1ak0 270 5.96e+00 1ak0 a.124.1.2 19345 1orrA 347 6.02e+00 c.2.1.2 93460 1cp2A 269 6.98e+00 1cp2A c.37.1.10 32269 1nznA 126 8.20e+00 a.118.8.1 92382 1hnjA 317 1.11e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 1qhkA 47 1.12e+01 1qhkA d.100.1.2 40694 1u84A 90 1.31e+01 1qyaA 307 1.49e+01 d.21.1.2,d.21.1.2 104653,104654 1jb3A 131 1.94e+01 1jc7A b.40.3.2 62833 1bif 469 2.05e+01 1bif c.37.1.7,c.60.1.4 31961,34003 1i2sA 282 2.08e+01 e.3.1.1 71104 1oqqA 106 2.13e+01 d.15.4.1 93422 1f8fA 371 2.19e+01 b.35.1.2,c.2.1.1 83246,83247 1h16A 759 2.33e+01 c.7.1.1 76462 1oh4A 179 2.45e+01 b.18.1.18 92978 1nw1A 429 2.63e+01 d.144.1.8 86286 1om4A 422 2.70e+01 d.174.1.1 87067 1lzlA 323 2.78e+01 c.69.1.2 78306 1ju3A 583 2.93e+01 b.18.1.13,c.69.1.21 67300,67301 1ev7A 317 3.09e+01 1ev7B c.52.1.9 33315 1e0fI 57 3.14e+01 1e0fI g.3.15.2 44377 1i7hA 111 3.18e+01 d.15.4.1 71122 1fwxA 595 3.30e+01 b.6.1.4,b.69.3.1 60069,60070 1nc5A 373 3.31e+01 a.102.1.6 85548 1rypG 244 3.37e+01 d.153.1.4 41938 1pn0A 665 3.45e+01 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 1omrA 201 3.48e+01 a.39.1.5 93349 1g3mA 294 3.64e+01 c.37.1.5 83268 1sc6A 404 3.70e+01 1oacA 727 3.76e+01 1oacA b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 1cex 214 3.98e+01 1cex c.69.1.30 31285 1mlwA 301 4.03e+01 d.178.1.1 79289 1r61A 207 4.11e+01 c.8.8.1 97138 1j75A 67 4.13e+01 a.4.5.19 62673 1i60A 278 4.19e+01 c.1.15.4 71118 1t64A 377 4.47e+01 c.42.1.2 106543 1di6A 195 4.48e+01 1di6A c.57.1.1 33863 1ooyA 481 4.49e+01 c.124.1.3,c.124.1.2 93388,93389 1ekjA 221 4.53e+01 1ekjB c.53.2.1 33364 1kcfA 258 4.68e+01 a.140.2.1,c.55.3.7 68434,68435 1spxA 278 4.77e+01 c.2.1.2 98958 1pqhA 143 4.83e+01 b.52.2.1 95017 1vrmA 325 4.83e+01 1aihA 170 4.96e+01 1aihA d.163.1.1 42149 1jbwA 428 4.99e+01 c.59.1.2,c.72.2.2 62860,62861 1em8B 112 5.07e+01 c.126.1.1 90458 1cghA 224 5.14e+01 1a7s b.47.1.2 26290 1js8A 394 5.15e+01 a.86.1.1,b.112.1.1 67219,67220 1f15A 218 5.42e+01 1f15B b.121.4.5 23320 1iapA 211 5.52e+01 a.91.1.1 62119 1bupA 386 5.70e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 1r7lA 110 5.81e+01 d.277.1.1 104837 1i6pA 220 5.88e+01 1ddzA c.53.2.1 61848 1o54A 277 5.90e+01 c.66.1.13 92482 1o2dA 371 6.03e+01 e.22.1.2 86591 1jmkC 230 6.07e+01 c.69.1.22 71747 1to6A 371 6.16e+01 c.141.1.1 107170 1e30A 155 6.18e+01 1rcy b.6.1.1 23016 1kyhA 276 6.38e+01 c.72.1.4 73222 1t6nA 220 6.40e+01 c.37.1.19 106576 1gpqA 135 6.43e+01 d.233.1.1 83295 1xs0A 136 6.49e+01 1uk8A 282 6.56e+01 c.69.1.10 107907 1p3dA 475 6.62e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1gsa 316 6.72e+01 1gsa c.30.1.3,d.142.1.1 31718,41477 1sr8A 298 6.74e+01 e.54.1.1 105959 1t2dA 322 6.77e+01 c.2.1.5,d.162.1.1 99084,99085 1hm6A 346 6.83e+01 1avc a.65.1.1 18147 1kq3A 376 7.02e+01 e.22.1.2 68790 1sg7A 96 7.10e+01 1b12A 248 7.11e+01 1b12A b.87.1.2 28388 1pzsA 208 7.19e+01 b.1.8.1 104397 1npsA 88 7.21e+01 1prs b.11.1.1 23622 1pg6A 243 7.24e+01 b.82.5.2 94673 1nrzA 164 7.31e+01 c.38.1.1 86131 1ve2A 235 7.33e+01 1m6eX 359 7.94e+01 c.66.1.35 91188 1d1gA 168 8.01e+01 1d1gA c.71.1.1 34889 1mfmA 153 8.04e+01 1mfmA b.1.8.1 22246 2ck3G 272 8.08e+01 2gf9A 189 8.15e+01 1i1wA 303 8.22e+01 c.1.8.3 76732 1rl4A 188 8.27e+01 d.167.1.1 97636 1hyhA 309 8.38e+01 1hyhA c.2.1.5,d.162.1.1 30150,42117 1unqA 125 8.48e+01 b.55.1.1 107968 1q0eA 152 8.52e+01 b.1.8.1 95504 1w41A 101 8.61e+01 1qq9A 284 8.80e+01 1xjo c.56.5.4 33841