# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gqzA 274 8.03e-03 d.21.1.1,d.21.1.1 83311,83312 2gkeA 274 9.57e-03 1qyaA 307 6.11e-02 d.21.1.2,d.21.1.2 104653,104654 1sdjA 310 7.45e-02 d.21.1.2,d.21.1.2 98807,98808 1lm4A 194 1.78e+00 d.167.1.1 84626 1dlwA 116 2.37e+00 1dlyA a.1.1.1 14982 1k12A 158 2.65e+00 b.18.1.15 71978 1b12A 248 3.47e+00 1b12A b.87.1.2 28388 1omrA 201 3.93e+00 a.39.1.5 93349 1mqoA 227 4.30e+00 d.157.1.1 103846 1rz3A 201 4.76e+00 c.37.1.6 98132 1lj5A 379 4.81e+00 e.1.1.1 73928 1xubA 298 5.08e+00 1ejxC 567 6.04e+00 b.92.1.1,c.1.9.2 83184,83185 1ev7A 317 6.15e+00 1ev7B c.52.1.9 33315 1e42A 258 6.68e+00 1e42A b.1.10.1,d.105.1.1 22316,40792 1lshA 1056 7.86e+00 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1mo9A 523 7.95e+00 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1f9zA 135 9.36e+00 1qipA d.32.1.1 38484 1pzsA 208 9.45e+00 b.1.8.1 104397 1x6zA 123 9.51e+00 1ca1 370 9.78e+00 1ca1 a.124.1.1,b.12.1.3 19340,23648 1js8A 394 1.06e+01 a.86.1.1,b.112.1.1 67219,67220 1ta3A 274 1.09e+01 c.1.8.5 106731 1ju3A 583 1.09e+01 b.18.1.13,c.69.1.21 67300,67301 1d3bA 75 1.18e+01 1d3bA b.38.1.1 24798 1kk1A 410 1.18e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1pmhX 185 1.29e+01 b.18.1.18 104193 1u84A 90 1.34e+01 1prxA 224 1.36e+01 1prxA c.47.1.10 33076 1v58A 241 1.41e+01 c.47.1.9,d.17.3.1 108371,108372 1g8iA 190 1.41e+01 1rec a.39.1.5 60363 1r7lA 110 1.53e+01 d.277.1.1 104837 1budA 197 1.56e+01 1atlA d.92.1.9 40328 1f9yA 158 1.61e+01 d.58.30.1 83249 1orrA 347 1.62e+01 c.2.1.2 93460 1cex 214 1.65e+01 1cex c.69.1.30 31285 1smxA 96 1.68e+01 b.40.4.5 105772 1mi3A 322 1.76e+01 c.1.7.1 91274 1mixA 206 1.85e+01 a.11.2.1,b.55.1.5 79166,79167 1fo8A 343 1.87e+01 1foaA c.68.1.10 59927 1suwA 249 1.89e+01 e.52.1.1 106027 2bjqA 345 1.97e+01 1qwtA 255 2.16e+01 b.26.1.3 96501 1g60A 260 2.19e+01 c.66.1.11 70151 1qhlA 227 2.23e+01 1qhlA c.37.1.12 32382 1bupA 386 2.28e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 1gyvA 120 2.30e+01 b.1.10.2 70790 1j5wA 298 2.32e+01 d.104.1.1 71589 1oygA 447 2.34e+01 b.67.2.2 93726 1otgA 125 2.35e+01 1otgA d.80.1.2 39831 1b5pA 385 2.36e+01 c.67.1.1 90403 1erjA 393 2.41e+01 1erjA b.69.4.1 27660 1reqB 637 2.41e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 1n9lA 109 2.43e+01 d.110.3.6 85468 1d2sA 170 2.58e+01 1d2sA b.29.1.4 24221 1odmA 331 2.59e+01 b.82.2.1 86875 1dhkB 223 2.91e+01 1led b.29.1.1 24157 1iq6A 134 2.94e+01 d.38.1.4 76755 1x99A 145 3.00e+01 1n7fA 97 3.09e+01 b.36.1.1 91692 1nvmB 312 3.14e+01 c.2.1.3,d.81.1.1 86251,86252 1feuA 206 3.20e+01 1feuA b.53.1.1 59801 1ospO 257 3.20e+01 1ospO b.76.1.1 27971 1sr8A 298 3.21e+01 e.54.1.1 105959 1xeoA 168 3.22e+01 1hdkA 141 3.26e+01 b.29.1.3 65807 1dykA 394 3.29e+01 1dykA b.29.1.4,b.29.1.4 24223,24224 1ogsA 497 3.36e+01 b.71.1.2,c.1.8.3 86997,86998 1lf6A 684 3.36e+01 a.102.1.5,b.30.5.5 77918,77919 1dl5A 317 3.37e+01 1dl5A c.66.1.7,d.197.1.1 64720,64721 1hmt 132 3.38e+01 1hmt b.60.1.2 27169 1tt8A 164 3.40e+01 1qmyA 167 3.60e+01 1qmyA d.3.1.2 37094 1ftrA 296 3.61e+01 1ftrA d.58.33.1,d.58.33.1 39485,39486 1epfA 191 3.67e+01 2ncm b.1.1.4,b.1.1.4 21694,21695 1nznA 126 3.72e+01 a.118.8.1 92382 1jbiA 100 3.73e+01 d.209.1.1 66481 1o91A 178 3.80e+01 b.22.1.1 92656 1iq4A 179 3.80e+01 1iq4A d.77.1.1 62641 1pbyA 489 3.91e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 94417,94418,94419,94420,94421 1kafA 108 3.97e+01 d.199.1.1 68372 1qouA 181 3.97e+01 1qouA b.17.1.1 23707 1aop 497 4.02e+01 2aop d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 1q8rA 120 4.16e+01 d.79.6.1 96225 1j2jB 45 4.19e+01 a.7.8.1 84017 1xfsA 178 4.33e+01 d.129.3.5 109589 1acc 735 4.33e+01 1acc f.11.1.1 43828 1ttwA 138 4.36e+01 d.198.1.1 107308 1rqwA 207 4.37e+01 b.25.1.1 97781 1gzcA 239 4.39e+01 b.29.1.1 70803 1tuhA 156 4.47e+01 d.17.4.11 107345 1jr2A 286 4.47e+01 c.113.1.1 67111 1n7eA 97 4.48e+01 b.36.1.1 91691 1uj2A 252 4.49e+01 c.37.1.6 99452 1aun 208 4.63e+01 1thv b.25.1.1 23900 1d02A 202 4.67e+01 1d02A c.52.1.8 33313 1qi9A 556 4.69e+01 1qhbA a.111.1.2 19053 1jbwA 428 4.78e+01 c.59.1.2,c.72.2.2 62860,62861 1n9pA 207 4.81e+01 b.1.18.16 80343 1b6a 478 4.87e+01 1bn5 a.4.5.25,d.127.1.1 16223,41160 1pylA 97 5.00e+01 d.1.1.2 104391 1lr0A 129 5.01e+01 d.212.1.1 74213 1jjtA 228 5.07e+01 1a7tA d.157.1.1 63139 1iq9A 61 5.08e+01 g.7.1.1 90669 1vk1A 242 5.10e+01 d.268.1.2 108634 1kbvA 327 5.17e+01 b.6.1.3,b.6.1.3 68395,68396 1e2wA 251 5.17e+01 1hcz b.2.6.1,b.84.2.2 22466,28252 1f00I 282 5.20e+01 1f00I b.1.14.1,b.1.14.1,d.169.1.3 22368,22369,42439 1q6hA 224 5.22e+01 d.26.1.1 95975 1rb9 53 5.34e+01 1rb9 g.41.5.1 45214 2sli 679 5.35e+01 2sli b.29.1.9,b.68.1.1 24274,27611 1t0pB 86 5.38e+01 1cp2A 269 5.38e+01 1cp2A c.37.1.10 32269 1lm8V 160 5.40e+01 b.3.3.1 74035 1tg7A 971 5.45e+01 1qhkA 47 5.68e+01 1qhkA d.100.1.2 40694 1yg9A 330 5.68e+01 1n0zA 45 5.69e+01 g.41.11.1 85247 1m1sA 116 5.69e+01 b.1.11.2 84747 1gr3A 160 5.71e+01 b.22.1.1 65476 1nn6A 228 5.74e+01 b.47.1.2 85893 1amf 233 5.77e+01 1wod c.94.1.1 35833 1lu4A 136 5.84e+01 c.47.1.10 91124 1v7wA 807 5.88e+01 a.102.1.4,b.30.5.3 108411,108412 1j7xA 302 6.02e+01 c.14.1.2 66425 1r3eA 309 6.05e+01 b.122.1.1,d.265.1.2 96907,96908 1knmA 130 6.09e+01 b.42.2.1 72781 1wnaA 131 6.13e+01 1m2xA 223 6.14e+01 d.157.1.1 84764 1ut1A 148 6.28e+01 b.2.3.6 108014 1gweA 503 6.28e+01 e.5.1.1 70667 1g7sA 594 6.35e+01 1g7rA b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 1pswA 348 6.44e+01 c.87.1.7 88287 1lkdA 297 6.49e+01 d.32.1.3,d.32.1.3 78059,78060 1mknA 59 6.64e+01 1mknA g.5.1.1 44383 1avbA 226 6.66e+01 1led b.29.1.1 24158 1qexA 288 6.75e+01 1qexA b.32.1.1 24425 1q8iA 783 6.76e+01 c.55.3.5,e.8.1.1 96208,96209 1iioA 84 6.79e+01 a.39.4.1 66150 1qwlA 505 6.79e+01 e.5.1.1 96483 2sak 121 6.89e+01 2sak d.15.5.1 37711 1qfgA 725 6.91e+01 1by5A f.4.3.3 43803 1f15A 218 7.20e+01 1f15B b.121.4.5 23320 1h4vB 421 7.29e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 2pvbA 107 7.48e+01 1a75A a.39.1.4 17205 1tq5A 242 7.48e+01 1j1nA 492 7.62e+01 c.94.1.1 83978 1so7A 382 7.63e+01 1mwvA 714 7.71e+01 a.93.1.3,a.93.1.3 85161,85162 1ton 235 7.75e+01 5ptp b.47.1.2 26307 1h98A 78 7.90e+01 d.58.1.2 65743 1s5dA 240 7.99e+01 d.166.1.1 98541 1gpmA 525 8.04e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2ck3G 272 8.04e+01 1nxb 62 8.05e+01 3ebx g.7.1.1 44395 1pn2A 280 8.17e+01 d.38.1.4,d.38.1.4 94930,94931 1g79A 218 8.27e+01 1ci0A b.45.1.1 25752 1e5pA 151 8.34e+01 1bj7 b.60.1.1 59272 1jdw 423 8.36e+01 1jdw d.126.1.2 41129 1byrA 155 8.38e+01 1byrA d.136.1.1 41450 1aym2 261 8.45e+01 1aym2 1bhi 38 8.57e+01 1bhi g.37.1.1 45052 1e0bA 68 8.57e+01 1e0bA b.34.13.2 37476 1i7hA 111 8.69e+01 d.15.4.1 71122 1brfA 53 8.71e+01 1rb9 g.41.5.1 45236 1rdg 53 8.75e+01 1rb9 g.41.5.1 45221 1elvA 333 8.78e+01 5ptp b.47.1.2,g.18.1.1 59454,59455 1cghA 224 8.83e+01 1a7s b.47.1.2 26290 1obdA 306 8.84e+01 d.143.1.1 86767 1bgvA 449 8.90e+01 1k89 c.2.1.7,c.58.1.1 30217,33865 2gf9A 189 8.96e+01 1s69A 124 8.96e+01 a.1.1.1 105305 1em2A 229 8.99e+01 1em2A d.129.3.2 41321