# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gkeA 274 2.40e-03 1gqzA 274 4.02e-03 d.21.1.1,d.21.1.1 83311,83312 1qyaA 307 2.46e-01 d.21.1.2,d.21.1.2 104653,104654 1h21A 247 5.97e-01 a.138.1.3 76510 1sdjA 310 7.82e-01 d.21.1.2,d.21.1.2 98807,98808 1ak0 270 3.24e+00 1ak0 a.124.1.2 19345 1nw1A 429 4.46e+00 d.144.1.8 86286 1nznA 126 5.32e+00 a.118.8.1 92382 1suwA 249 7.41e+00 e.52.1.1 106027 1xubA 298 8.22e+00 1pqhA 143 9.71e+00 b.52.2.1 95017 1kyhA 276 9.94e+00 c.72.1.4 73222 1shyB 551 1.11e+01 b.69.12.1,g.16.2.1 105565,105566 1i2sA 282 1.13e+01 e.3.1.1 71104 1kcfA 258 1.15e+01 a.140.2.1,c.55.3.7 68434,68435 1pg6A 243 1.30e+01 b.82.5.2 94673 1m6eX 359 1.34e+01 c.66.1.35 91188 1spxA 278 1.71e+01 c.2.1.2 98958 1f8fA 371 1.82e+01 b.35.1.2,c.2.1.1 83246,83247 1f15A 218 2.13e+01 1f15B b.121.4.5 23320 1c44A 123 2.18e+01 1qndA d.106.1.1 40795 1oqqA 106 2.27e+01 d.15.4.1 93422 1hnjA 317 2.30e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 1iejA 332 2.44e+01 1nnt c.94.1.2 62328 1zelA 298 2.68e+01 1di6A 195 2.90e+01 1di6A c.57.1.1 33863 1nc5A 373 2.90e+01 a.102.1.6 85548 1iapA 211 2.94e+01 a.91.1.1 62119 1gw5A 621 3.02e+01 a.118.1.10 70629 1tp5A 119 3.14e+01 1b12A 248 3.15e+01 1b12A b.87.1.2 28388 1dg9A 157 3.16e+01 1dg9A c.44.1.1 32637 1x9iA 302 3.17e+01 1h16A 759 3.21e+01 c.7.1.1 76462 1ia9A 280 3.47e+01 1ia9A d.144.1.5 62113 1o2dA 371 3.56e+01 e.22.1.2 86591 1m9zA 111 3.58e+01 g.7.1.3 78881 1fjgL 135 3.72e+01 1fjfL b.40.4.5 25346 1ornA 226 3.74e+01 a.96.1.1 87342 1txgA 335 3.76e+01 1j8fA 323 3.86e+01 1j8fA c.31.1.5 62738 1cp2A 269 3.99e+01 1cp2A c.37.1.10 32269 1b24A 188 4.15e+01 1b24A d.95.2.1,d.95.2.1 40573,40574 1qfxA 460 4.38e+01 1qfxA c.60.1.2 33994 1ta9A 450 4.45e+01 1nnfA 309 4.51e+01 c.94.1.1 85903 1yn9A 169 4.60e+01 1mk4A 157 4.72e+01 d.108.1.1 84979 1s55A 156 4.84e+01 4ubpA 101 4.90e+01 1ubpA d.8.1.1 37352 1nzjA 298 5.02e+01 c.26.1.1 92377 1svsA 353 5.04e+01 c.37.1.8 106051 1i88A 389 5.39e+01 c.95.1.2,c.95.1.2 66070,66071 1jb3A 131 5.47e+01 1jc7A b.40.3.2 62833 1p9eA 331 5.74e+01 d.157.1.5 104088 1puoA 170 5.75e+01 a.101.1.1,a.101.1.1 95134,95135 1t3qA 168 5.83e+01 a.56.1.1,d.15.4.2 106367,106368 1q8yA 373 5.84e+01 d.144.1.7 96234 1fuxA 166 5.85e+01 1fjjA b.17.1.2 60034 1jbwA 428 5.93e+01 c.59.1.2,c.72.2.2 62860,62861 1wdpA 495 5.96e+01 1cipA 353 6.19e+01 1cipA a.66.1.1,c.37.1.8 18210,32093 1ejxA 100 6.22e+01 d.8.1.1 83182 1nddA 76 6.29e+01 1ubi d.15.1.1 37599 1js8A 394 6.34e+01 a.86.1.1,b.112.1.1 67219,67220 1vm0A 130 6.50e+01 d.68.6.2 108873 1rm6B 324 6.54e+01 1h7eA 245 6.68e+01 c.68.1.13 60717 1i12A 160 6.70e+01 1i21A d.108.1.1 61515 1t2dA 322 6.81e+01 c.2.1.5,d.162.1.1 99084,99085 1mjfA 281 6.91e+01 c.66.1.17 79198 1fiqB 350 6.93e+01 1fiqB d.87.2.1,d.145.1.3 40229,41760 1hyhA 309 6.98e+01 1hyhA c.2.1.5,d.162.1.1 30150,42117 1hynP 379 7.00e+01 1hynP d.112.1.2 61408 1ppfE 218 7.13e+01 1a7s b.47.1.2 26234 1vk1A 242 7.32e+01 d.268.1.2 108634 1nnwA 252 7.37e+01 d.159.1.5 80674 1ekqA 272 7.60e+01 1c3qA c.72.1.2 34941 1j0hA 588 7.68e+01 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1lyvA 306 7.70e+01 c.45.1.2 74348 1g0oA 283 7.73e+01 1ybvA c.2.1.2 60181 1bw3 125 7.82e+01 1bw4 b.52.1.2 26899 1qbjA 81 7.85e+01 1qbjA a.4.5.19 16155 1ju3A 583 7.87e+01 b.18.1.13,c.69.1.21 67300,67301 1nzyA 269 7.94e+01 1nzyA c.14.1.3 30903 1w27A 714 8.10e+01 1mfmA 153 8.21e+01 1mfmA b.1.8.1 22246 1q7zA 566 8.31e+01 c.1.21.2,c.1.26.1 96090,96091 1q2yA 140 8.38e+01 d.108.1.1 95655 1g2iA 166 8.48e+01 1g2iA c.23.16.2 31438 1vhwA 253 8.50e+01 c.56.2.1 100706 1r4pB 70 8.60e+01 b.40.2.1 97026 1omzA 293 8.72e+01 c.68.1.15 87093