Best Alignments for T0301

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1w61A/T0301-1w61A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1w61A/T0301-1w61A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.1286e-031.56e-17
2gkeA/T0301-2gkeA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gkeA/T0301-2gkeA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2823e-015.65e-18
1gqzA/T0301-1gqzA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gqzA/T0301-1gqzA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.8567e-018.22e-15 d.21.1.1
d.21.1.1
1sdjA/T0301-1sdjA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1sdjA/T0301-1sdjA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1340e+003.31e-12 d.21.1.2
d.21.1.2
1tm0A/T0301-1tm0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1tm0A/T0301-1tm0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.3808e+001.25e-09 d.21.1.3
1s7jA/T0301-1s7jA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1s7jA/T0301-1s7jA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.6465e+001.17e-09 d.21.1.2
1xubA/T0301-1xubA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xubA/T0301-1xubA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.5231e+002.14e-11
1u1wA/T0301-1u1wA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1u1wA/T0301-1u1wA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.3781e+005.82e-11
1f76A/T0301-1f76A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1f76A/T0301-1f76A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3500e+012.23e+01 c.1.4.1
1ci3M/T0301-1ci3M-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ci3M/T0301-1ci3M-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3919e+016.29e-07 1hcz b.2.6.1
b.84.2.2

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001