# List of top-scoring protein chains for T0301.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1y9kA 157 9.07e-01 2gkeA 274 8.27e+00 1h21A 247 8.79e+00 a.138.1.3 76510 1bwzA 274 8.89e+00 1bwzA d.21.1.1,d.21.1.1 38337,38338 1mblA 256 1.14e+01 1btl e.3.1.1 42723 1f76A 336 1.35e+01 c.1.4.1 76160 1cp2A 269 1.38e+01 1cp2A c.37.1.10 32269 4blmA 265 1.39e+01 1btl e.3.1.1 42721 2rspA 124 1.43e+01 2rspB b.50.1.1 26771 1mvpA 124 1.48e+01 2rspB b.50.1.1 26775 1baiA 124 1.60e+01 2rspB b.50.1.1 26773 1i2sA 282 1.83e+01 e.3.1.1 71104 1qasA 622 1.99e+01 1djxB a.39.1.7,b.7.1.1,c.1.18.1 17340,23157,29585 1djxA 624 1.99e+01 1djxB a.39.1.7,b.7.1.1,c.1.18.1 17342,23159,29587 2bs3B 239 2.02e+01 1ioaA 240 2.77e+01 1led b.29.1.1 24168 1zbpA 273 2.82e+01 1c17M 177 2.94e+01 1c17M f.18.1.1 43648 1st8A 543 3.05e+01 2a9bA 372 3.06e+01 2a9aA 372 3.07e+01 1soxA 466 3.09e+01 1soxA b.1.18.6,d.120.1.1,d.176.1.1 21947,41090,42563 1hixA 190 3.10e+01 b.29.1.11 65839 1e0fI 57 3.15e+01 1e0fI g.3.15.2 44377 1f3dJ 219 3.37e+01 32c2A b.1.1.1,b.1.1.2 20461,21425 1ri7A 171 3.38e+01 a.4.5.32,d.58.4.2 97504,97505 1r18A 227 3.46e+01 c.66.1.7 96800 1ci9A 392 3.62e+01 e.3.1.1 64767 2ew1A 201 3.67e+01 1xlqA 106 3.70e+01 1oqqA 106 3.85e+01 d.15.4.1 93422 1xfjA 261 3.86e+01 d.194.1.2 109585 1r7sA 106 3.87e+01 d.15.4.1 97207 1z21A 112 3.88e+01 1pdxA 106 3.98e+01 1ayfA d.15.4.1 37682 1y3nA 490 4.13e+01 1gpx 106 4.14e+01 1ayfA d.15.4.1 37681 1j7jA 178 4.38e+01 c.61.1.1 84131 2afhE 289 4.38e+01 1qhkA 47 4.44e+01 1qhkA d.100.1.2 40694 1put 106 4.62e+01 1ayfA d.15.4.1 37680 1atnD 260 4.69e+01 3dni d.151.1.1 41793 1de0A 289 4.72e+01 1cp2A c.37.1.10 32255 1kynA 235 4.96e+01 b.47.1.2 73247 1uc2A 481 5.17e+01 d.261.1.1 99161 2fq1A 287 5.21e+01 1cghA 224 5.25e+01 1a7s b.47.1.2 26290 1zz1A 369 5.38e+01 1dlwA 116 5.39e+01 1dlyA a.1.1.1 14982 1xd8A 289 5.42e+01 1s6yA 450 5.44e+01 c.2.1.5,d.162.1.2 105314,105315 1u84A 90 5.46e+01 5fivA 113 5.51e+01 1fmb b.50.1.1 26765 1wflA 74 5.52e+01 1xdbA 289 5.72e+01 1i60A 278 5.79e+01 c.1.15.4 71118 1to6A 371 6.10e+01 c.141.1.1 107170 2f6uA 234 6.31e+01 2pcpA 216 6.37e+01 8fabA b.1.1.1,b.1.1.2 20370,21362 1qy9A 297 6.45e+01 d.21.1.2,d.21.1.2 104645,104646 1rw4A 272 6.46e+01 c.37.1.10 97962 1sdjA 310 6.46e+01 d.21.1.2,d.21.1.2 98807,98808 1qyaA 307 6.51e+01 d.21.1.2,d.21.1.2 104653,104654 1oh4A 179 6.59e+01 b.18.1.18 92978 1g20E 289 6.60e+01 1cp2A c.37.1.10 32247 1nqbA 256 6.61e+01 1mfa b.1.1.1,b.1.1.1 20042,20043 1fl5A 217 6.63e+01 b.1.1.1,b.1.1.2 65015,65016 1ktrL 116 6.67e+01 b.1.1.1 72993 1w61A 414 7.28e+01 1kelL 217 7.39e+01 8fabA b.1.1.1,b.1.1.2 20112,21142 1bk8 50 7.49e+01 1ayj g.3.7.5 44178 1plgL 215 7.51e+01 8fabA b.1.1.1,b.1.1.2 20080,21112 1fcjA 322 7.74e+01 1oasA c.79.1.1 35289 1d6sA 322 7.76e+01 1oasA c.79.1.1 35295 1i9jL 219 7.87e+01 b.1.1.1,b.1.1.2 71146,71147 2c3nA 247 7.91e+01 2c3qA 247 7.99e+01 1jebA 142 8.00e+01 a.1.1.2 66591 1thtA 305 8.05e+01 1thtA c.69.1.13 34711 1pca 403 8.11e+01 1aye c.56.5.1,d.58.3.1 33822,39063 1pc2A 152 8.14e+01 a.118.8.1 94427 2g6yA 217 8.28e+01 1igfL 219 8.30e+01 8fabA b.1.1.1,b.1.1.2 19812,20922 1x4gA 109 8.34e+01 2trcP 217 8.36e+01 1b9yC c.47.1.6 33051 1axtL 216 8.43e+01 8fabA b.1.1.1,b.1.1.2 20304,21296 1omzA 293 8.57e+01 c.68.1.15 87093 2c4wA 176 8.91e+01 1o5wA 534 8.94e+01 c.3.1.2,d.16.1.5 92520,92521