# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1w61A 414 1.91e-01 2gkeA 274 2.64e-01 1gqzA 274 3.59e-01 d.21.1.1,d.21.1.1 83311,83312 1bwzA 274 3.78e-01 1bwzA d.21.1.1,d.21.1.1 38337,38338 1qyaA 307 5.96e-01 d.21.1.2,d.21.1.2 104653,104654 1sdjA 310 1.40e+00 d.21.1.2,d.21.1.2 98807,98808 1tm0A 350 1.63e+00 d.21.1.3 107147 1mixA 206 1.86e+00 a.11.2.1,b.55.1.5 79166,79167 1s7jA 262 2.17e+00 d.21.1.2 98647 1usyA 275 3.85e+00 1q47A 495 4.27e+00 b.69.12.1 104532 1ev7A 317 4.51e+00 1ev7B c.52.1.9 33315 1rec 201 7.28e+00 1rec a.39.1.5 17326 2g6yA 217 9.44e+00 1v25A 541 1.08e+01 e.23.1.1 108275 1k12A 158 1.13e+01 b.18.1.15 71978 1lj5A 379 1.16e+01 e.1.1.1 73928 1qwtA 255 1.22e+01 b.26.1.3 96501 2bvlA 543 1.29e+01 1lshA 1056 1.39e+01 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1f9yA 158 1.47e+01 d.58.30.1 83249 2aieP 203 1.73e+01 1oivA 191 1.85e+01 c.37.1.8 93076 1b5pA 385 1.87e+01 c.67.1.1 90403 2sak 121 1.95e+01 2sak d.15.5.1 37711 1lm6A 215 1.95e+01 d.167.1.1 84628 1z94A 147 1.97e+01 1dlwA 116 2.00e+01 1dlyA a.1.1.1 14982 2av9A 147 2.06e+01 1ejxC 567 2.08e+01 b.92.1.1,c.1.9.2 83184,83185 1u84A 90 2.10e+01 2a6tA 271 2.11e+01 1lf6A 684 2.11e+01 a.102.1.5,b.30.5.5 77918,77919 1bjwA 382 2.16e+01 1bjwA c.67.1.1 34349 1vcbC 160 2.31e+01 1vcbC b.3.3.1 22535 1z0sA 278 2.64e+01 1suwA 249 2.64e+01 e.52.1.1 106027 2ae6A 166 2.65e+01 2azpA 318 2.67e+01 1mo9A 523 2.70e+01 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1omrA 201 2.81e+01 a.39.1.5 93349 1u0kA 288 2.88e+01 d.21.1.2,d.21.1.2 107547,107548 1ut9A 609 2.89e+01 a.102.1.2,b.1.18.2 99912,99913 1budA 197 3.02e+01 1atlA d.92.1.9 40328 1eqoA 158 3.10e+01 1hka 1mkaA 171 3.11e+01 1mkaA d.38.1.2 38543 1xo1A 291 3.17e+01 1exnA a.60.7.1,c.120.1.2 18086,33356 1qhqA 140 3.19e+01 1qhqA b.6.1.1 63326 1mqoA 227 3.23e+01 d.157.1.1 103846 1prxA 224 3.28e+01 1prxA c.47.1.10 33076 1ut8A 291 3.32e+01 a.60.7.1,c.120.1.2 99908,99909 1g7sA 594 3.38e+01 1g7rA b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 1fo8A 343 3.38e+01 1foaA c.68.1.10 59927 1fjgL 135 3.41e+01 1fjfL b.40.4.5 25346 1ng2A 193 3.44e+01 b.34.2.1,b.34.2.1 85660,85661 1rz3A 201 3.48e+01 c.37.1.6 98132 1lm8V 160 3.49e+01 b.3.3.1 74035 1nvmB 312 3.60e+01 c.2.1.3,d.81.1.1 86251,86252 1a7cA 379 3.61e+01 1sek e.1.1.1 42660 1otgA 125 3.66e+01 1otgA d.80.1.2 39831 1wthD 391 3.67e+01 7fd1A 106 3.74e+01 1a6l d.58.1.2 38953 1q48A 134 3.75e+01 d.224.1.2 95783 2fgtA 417 3.85e+01 2dddA 225 3.94e+01 1yqzA 438 4.04e+01 1g291 372 4.12e+01 1g291 1v54F 98 4.12e+01 g.41.5.3 100327 1lm4A 194 4.18e+01 d.167.1.1 84626 2gc9A 179 4.24e+01 1r7lA 110 4.26e+01 d.277.1.1 104837 1xeoA 168 4.35e+01 1bs4A 168 4.35e+01 1bs4A d.167.1.1 42287 1kk1A 410 4.43e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1pzsA 208 4.43e+01 b.1.8.1 104397 2g1lA 104 4.51e+01 1y0gA 191 4.59e+01 2bgiA 272 4.64e+01 1xssA 225 4.68e+01 1mkeA 152 4.79e+01 b.55.1.4 79231 2occF 98 4.85e+01 2occF g.41.5.3 45256 1wucA 250 4.90e+01 1yqfA 203 5.46e+01 2f6uA 234 5.54e+01 1ac5 483 5.58e+01 1ac5 c.69.1.5 34653 2cr4A 126 5.59e+01 2stv 195 5.72e+01 2stv b.121.7.1 23287 2bukA 196 5.72e+01 1g8iA 190 5.73e+01 1rec a.39.1.5 60363 1ov3A 138 5.74e+01 b.34.2.1,b.34.2.1 87451,87452 1p7hL 286 5.90e+01 b.1.18.1,b.2.5.3 94271,94272 1reqB 637 5.92e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 1a02N 301 6.00e+01 1a02N b.1.18.1,b.2.5.3 21923,22440 2ajuL 216 6.09e+01 1xs1A 193 6.12e+01 1n3gA 113 6.16e+01 d.204.1.1 79962 1uheA 97 6.57e+01 1zq1A 438 6.59e+01 1e42A 258 6.63e+01 1e42A b.1.10.1,d.105.1.1 22316,40792 1ha3A 405 6.67e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 60869,60870,60871 1qqsA 174 6.73e+01 1nglA b.60.1.1 27143 2bmeA 186 6.77e+01 1v58A 241 6.77e+01 c.47.1.9,d.17.3.1 108371,108372 1j5wA 298 6.95e+01 d.104.1.1 71589 1g72A 573 7.01e+01 4aahA b.70.1.1 27680 2bcgY 206 7.16e+01 1vhzA 198 7.22e+01 d.113.1.1 100718 1wb9A 800 7.28e+01 1ko3A 230 7.34e+01 d.157.1.1 90974 1z5zA 271 7.38e+01 1ukvY 206 7.48e+01 c.37.1.8 107918 1l5jA 865 7.64e+01 a.118.15.1,c.8.2.1,c.83.1.1 73592,73593,73594 2g6tA 306 7.66e+01 1xubA 298 7.77e+01 2bjqA 345 7.80e+01 1pbyA 489 7.91e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 94417,94418,94419,94420,94421 1m7vA 363 8.04e+01 d.174.1.1 78748 1egaA 301 8.06e+01 1egaA c.37.1.8,d.52.3.1 32150,38836 2apoA 357 8.13e+01 1kxgA 152 8.16e+01 b.22.1.1 73145 1dypA 271 8.22e+01 1dypA b.29.1.2 24185 2b5oA 402 8.43e+01 2bz1A 196 8.64e+01 1yobA 179 8.67e+01 1ym5A 300 8.98e+01