# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gkeA 274 1.14e-01 1gqzA 274 1.82e-01 d.21.1.1,d.21.1.1 83311,83312 1w61A 414 3.19e-01 1bwzA 274 4.45e-01 1bwzA d.21.1.1,d.21.1.1 38337,38338 1sdjA 310 5.02e+00 d.21.1.2,d.21.1.2 98807,98808 1h21A 247 6.98e+00 a.138.1.3 76510 1dlwA 116 8.17e+00 1dlyA a.1.1.1 14982 1zowA 313 1.03e+01 1l5jA 865 1.12e+01 a.118.15.1,c.8.2.1,c.83.1.1 73592,73593,73594 1y9kA 157 1.30e+01 1xfjA 261 1.31e+01 d.194.1.2 109585 1orrA 347 1.32e+01 c.2.1.2 93460 1ufbA 127 1.37e+01 a.24.16.3 99331 1s7jA 262 1.62e+01 d.21.1.2 98647 1ak0 270 1.66e+01 1ak0 a.124.1.2 19345 1nznA 126 1.77e+01 a.118.8.1 92382 1u84A 90 1.82e+01 2cr4A 126 1.82e+01 1gv3A 248 1.91e+01 a.2.11.1,d.44.1.1 70585,70586 1cp2A 269 1.93e+01 1cp2A c.37.1.10 32269 1soxA 466 1.99e+01 1soxA b.1.18.6,d.120.1.1,d.176.1.1 21947,41090,42563 1qhkA 47 2.11e+01 1qhkA d.100.1.2 40694 1hnjA 317 2.36e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 1qyaA 307 2.48e+01 d.21.1.2,d.21.1.2 104653,104654 1p5jA 372 2.51e+01 c.79.1.1 104067 1xd8A 289 2.57e+01 1yqzA 438 2.58e+01 1jjiA 311 2.61e+01 c.69.1.2 66766 1ut8A 291 2.62e+01 a.60.7.1,c.120.1.2 99908,99909 1ac5 483 2.89e+01 1ac5 c.69.1.5 34653 1bif 469 3.08e+01 1bif c.37.1.7,c.60.1.4 31961,34003 1xg9A 260 3.29e+01 1x1nA 524 3.34e+01 1oqqA 106 3.60e+01 d.15.4.1 93422 1xo1A 291 3.69e+01 1exnA a.60.7.1,c.120.1.2 18086,33356 1zghA 260 3.71e+01 1jb3A 131 3.76e+01 1jc7A b.40.3.2 62833 4blmA 265 4.07e+01 1btl e.3.1.1 42721 1uheA 97 4.70e+01 1ri7A 171 4.72e+01 a.4.5.32,d.58.4.2 97504,97505 1h16A 759 4.79e+01 c.7.1.1 76462 1i60A 278 4.85e+01 c.1.15.4 71118 1voqa 90 4.91e+01 1to6A 371 5.02e+01 c.141.1.1 107170 1lzlA 323 5.03e+01 c.69.1.2 78306 1n3gA 113 5.13e+01 d.204.1.1 79962 1i2sA 282 5.14e+01 e.3.1.1 71104 1vjkA 98 5.17e+01 d.15.3.1 108631 1wd5A 208 5.47e+01 2b59B 172 5.48e+01 1qlaB 239 5.51e+01 1qlaB a.1.2.1,d.15.4.2 15679,37707 1xlqA 106 5.52e+01 1of4A 179 5.53e+01 b.18.1.18 86932 1ux8A 132 5.71e+01 1cm5A 759 5.73e+01 1cm5A c.7.1.1 30671 1z21A 112 5.78e+01 1y0zA 330 5.90e+01 1nw1A 429 5.91e+01 d.144.1.8 86286 1zbpA 273 6.12e+01 1fgs 428 6.15e+01 1fgs c.59.1.2,c.72.2.2 33959,34962 1oh4A 179 6.41e+01 b.18.1.18 92978 1e0fI 57 6.50e+01 1e0fI g.3.15.2 44377 1z5bA 469 6.51e+01 1ev7A 317 6.52e+01 1ev7B c.52.1.9 33315 1nc5A 373 6.67e+01 a.102.1.6 85548 1i7hA 111 6.92e+01 d.15.4.1 71122 1fohA 664 6.92e+01 1fohA c.3.1.2,c.47.1.10,d.16.1.2 30381,33078,37900 2azpA 318 7.03e+01 1iapA 211 7.04e+01 a.91.1.1 62119 1sc6A 404 7.18e+01 2az4A 429 7.28e+01 1f8fA 371 7.43e+01 b.35.1.2,c.2.1.1 83246,83247 1cex 214 7.45e+01 1cex c.69.1.30 31285 1unqA 125 7.66e+01 b.55.1.1 107968 1p49A 562 7.66e+01 c.76.1.2 94089 1cghA 224 7.66e+01 1a7s b.47.1.2 26290 1ju3A 583 7.68e+01 b.18.1.13,c.69.1.21 67300,67301 1q47A 495 7.74e+01 b.69.12.1 104532 1omrA 201 7.74e+01 a.39.1.5 93349 2f6uA 234 7.96e+01 1tm0A 350 8.01e+01 d.21.1.3 107147 1zxxA 319 8.01e+01 1j75A 67 8.13e+01 a.4.5.19 62673 1g3mA 294 8.15e+01 c.37.1.5 83268 1ooyA 481 8.15e+01 c.124.1.3,c.124.1.2 93388,93389 2aebA 322 8.23e+01 1x71A 178 8.24e+01 2a6tA 271 8.28e+01 1rec 201 8.30e+01 1rec a.39.1.5 17326 1h10A 125 8.32e+01 b.55.1.1 83446 1o54A 277 8.43e+01 c.66.1.13 92482 1cf1A 404 8.44e+01 1cf1A b.1.18.11,b.1.18.11 21907,21908 1mzjA 339 8.47e+01 c.95.1.2,c.95.1.2 79700,79701 1nekA 588 8.63e+01 a.7.3.1,c.3.1.4,d.168.1.1 80426,80427,80428 1x89A 178 8.90e+01