# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1w61A 414 4.31e-02 1bwzA 274 1.86e-01 1bwzA d.21.1.1,d.21.1.1 38337,38338 1gqzA 274 2.16e-01 d.21.1.1,d.21.1.1 83311,83312 2gkeA 274 2.26e-01 1sdjA 310 1.69e+00 d.21.1.2,d.21.1.2 98807,98808 1mkeA 152 2.81e+00 b.55.1.4 79231 1s7jA 262 5.12e+00 d.21.1.2 98647 1qyaA 307 6.20e+00 d.21.1.2,d.21.1.2 104653,104654 1tm0A 350 6.28e+00 d.21.1.3 107147 2cxkA 95 1.10e+01 1ut9A 609 1.14e+01 a.102.1.2,b.1.18.2 99912,99913 1y0zA 330 1.30e+01 2g6yA 217 1.51e+01 1k12A 158 1.56e+01 b.18.1.15 71978 1eqoA 158 1.75e+01 1hka 1f9yA 158 1.75e+01 d.58.30.1 83249 1dlwA 116 1.80e+01 1dlyA a.1.1.1 14982 1yqfA 203 1.87e+01 1bk0 331 1.88e+01 1bk0 b.82.2.1 28118 1odmA 331 1.88e+01 b.82.2.1 86875 1ju3A 583 1.88e+01 b.18.1.13,c.69.1.21 67300,67301 1suwA 249 1.92e+01 e.52.1.1 106027 1z0sA 278 2.09e+01 1mqoA 227 2.19e+01 d.157.1.1 103846 1mixA 206 2.33e+01 a.11.2.1,b.55.1.5 79166,79167 1usyA 275 2.53e+01 1zynA 202 2.60e+01 1g291 372 2.76e+01 1g291 2bgiA 272 2.84e+01 2f6uA 234 2.86e+01 1ci3M 249 2.98e+01 1hcz b.2.6.1,b.84.2.2 22480,28266 1vcbC 160 3.07e+01 1vcbC b.3.3.1 22535 1lm4A 194 3.09e+01 d.167.1.1 84626 1oivA 191 3.25e+01 c.37.1.8 93076 1l5jA 865 3.26e+01 a.118.15.1,c.8.2.1,c.83.1.1 73592,73593,73594 1y3nA 490 3.30e+01 1j1nA 492 3.36e+01 c.94.1.1 83978 1lm8V 160 3.40e+01 b.3.3.1 74035 1prxA 224 3.49e+01 1prxA c.47.1.10 33076 1vj0A 380 3.68e+01 b.35.1.2,c.2.1.1 100786,100787 1s6lA 212 3.77e+01 1oixA 191 3.79e+01 1vlrA 350 3.97e+01 d.13.1.3,d.246.1.1 108860,108861 1ac5 483 4.00e+01 1ac5 c.69.1.5 34653 1mo9A 523 4.35e+01 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1ev7A 317 4.35e+01 1ev7B c.52.1.9 33315 1ffa 214 4.41e+01 1cex c.69.1.30 31289 1cex 214 4.46e+01 1cex c.69.1.30 31285 1yp2A 451 4.59e+01 1b12A 248 4.61e+01 1b12A b.87.1.2 28388 2bukA 196 4.63e+01 2stv 195 4.63e+01 2stv b.121.7.1 23287 1lj5A 379 4.67e+01 e.1.1.1 73928 1rec 201 4.74e+01 1rec a.39.1.5 17326 1xoyA 161 4.75e+01 1u84A 90 4.82e+01 1po0A 751 5.02e+01 f.4.3.3 94960 1omrA 201 5.04e+01 a.39.1.5 93349 1js8A 394 5.04e+01 a.86.1.1,b.112.1.1 67219,67220 2ajtA 500 5.10e+01 1kk1A 410 5.15e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1ut8A 291 5.16e+01 a.60.7.1,c.120.1.2 99908,99909 1z5zA 271 5.24e+01 1ym5A 300 5.25e+01 1p7hL 286 5.29e+01 b.1.18.1,b.2.5.3 94271,94272 1xqbA 247 5.37e+01 1xs1A 193 5.37e+01 1kmoA 774 5.41e+01 f.4.3.3 72753 1v58A 241 5.52e+01 c.47.1.9,d.17.3.1 108371,108372 1d02A 202 5.58e+01 1d02A c.52.1.8 33313 1nvmB 312 5.61e+01 c.2.1.3,d.81.1.1 86251,86252 1pzsA 208 5.62e+01 b.1.8.1 104397 1xo1A 291 5.63e+01 1exnA a.60.7.1,c.120.1.2 18086,33356 1budA 197 5.79e+01 1atlA d.92.1.9 40328 2azpA 318 5.93e+01 1nznA 126 6.20e+01 a.118.8.1 92382 2fomB 185 6.25e+01 1m7vA 363 6.32e+01 d.174.1.1 78748 2bvlA 543 6.35e+01 1lm6A 215 6.40e+01 d.167.1.1 84628 1xubA 298 6.44e+01 2aieP 203 6.63e+01 1f15A 218 6.71e+01 1f15B b.121.4.5 23320 1extA 162 6.74e+01 1extA g.24.1.1,g.24.1.1,g.24.1.1 44900,44901,44902 1fgxA 288 6.76e+01 1fgxA c.68.1.2 34508 1fa8A 135 6.92e+01 1qipA d.32.1.1 38486 1ri7A 171 7.02e+01 a.4.5.32,d.58.4.2 97504,97505 1pztA 286 7.03e+01 c.68.1.2 95470 1l1jA 239 7.12e+01 b.47.1.1 84516 2c6cA 707 7.16e+01 1n3gA 113 7.26e+01 d.204.1.1 79962 1yqdA 366 7.28e+01 2arzA 247 7.39e+01 1ejxC 567 7.61e+01 b.92.1.1,c.1.9.2 83184,83185 2fgtA 417 7.68e+01 3rabA 169 7.71e+01 1ctqA c.37.1.8 32018 1hhsA 664 7.76e+01 1hi0P e.8.1.6 61045 1erjA 393 7.78e+01 1erjA b.69.4.1 27660 2agdA 287 7.86e+01 1qhkA 47 7.87e+01 1qhkA d.100.1.2 40694 1q47A 495 7.90e+01 b.69.12.1 104532 1e2wA 251 7.93e+01 1hcz b.2.6.1,b.84.2.2 22466,28252 1feuA 206 8.09e+01 1feuA b.53.1.1 59801 2fy7A 287 8.14e+01 1f9zA 135 8.21e+01 1qipA d.32.1.1 38484 1o91A 178 8.58e+01 b.22.1.1 92656 2bjqA 345 8.80e+01 1a02N 301 8.84e+01 1a02N b.1.18.1,b.2.5.3 21923,22440 1x1nA 524 8.88e+01 1q48A 134 9.00e+01 d.224.1.2 95783