# List of top-scoring protein chains for t04-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1w61A 414 9.52e-03 1gqzA 274 2.47e-02 d.21.1.1,d.21.1.1 83311,83312 2gkeA 274 2.88e-02 1bwzA 274 4.27e-02 1bwzA d.21.1.1,d.21.1.1 38337,38338 1qyaA 307 2.18e-01 d.21.1.2,d.21.1.2 104653,104654 1sdjA 310 2.56e-01 d.21.1.2,d.21.1.2 98807,98808 1mkeA 152 8.12e-01 b.55.1.4 79231 1tm0A 350 1.69e+00 d.21.1.3 107147 1s7jA 262 3.16e+00 d.21.1.2 98647 1usyA 275 3.99e+00 2g6yA 217 4.36e+00 1lm4A 194 5.48e+00 d.167.1.1 84626 1dlwA 116 5.80e+00 1dlyA a.1.1.1 14982 1q47A 495 5.92e+00 b.69.12.1 104532 1z94A 147 6.23e+00 1k12A 158 6.79e+00 b.18.1.15 71978 1b12A 248 7.57e+00 1b12A b.87.1.2 28388 2bgiA 272 8.25e+00 2av9A 147 8.37e+00 1rec 201 8.42e+00 1rec a.39.1.5 17326 1ut9A 609 8.67e+00 a.102.1.2,b.1.18.2 99912,99913 2f6uA 234 8.74e+00 1lj5A 379 8.90e+00 e.1.1.1 73928 1xfjA 261 9.29e+00 d.194.1.2 109585 1y0zA 330 9.40e+00 1ejxC 567 1.00e+01 b.92.1.1,c.1.9.2 83184,83185 1omrA 201 1.03e+01 a.39.1.5 93349 1yqfA 203 1.07e+01 1mo9A 523 1.12e+01 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1xoyA 161 1.27e+01 1e42A 258 1.28e+01 1e42A b.1.10.1,d.105.1.1 22316,40792 2aieP 203 1.36e+01 1ut8A 291 1.39e+01 a.60.7.1,c.120.1.2 99908,99909 1ci3M 249 1.42e+01 1hcz b.2.6.1,b.84.2.2 22480,28266 1n3gA 113 1.46e+01 d.204.1.1 79962 1xo1A 291 1.48e+01 1exnA a.60.7.1,c.120.1.2 18086,33356 1mqoA 227 1.51e+01 d.157.1.1 103846 1y0gA 191 1.63e+01 2fomB 185 1.64e+01 2azpA 318 1.66e+01 1rz3A 201 1.68e+01 c.37.1.6 98132 1xubA 298 1.75e+01 1ev7A 317 1.84e+01 1ev7B c.52.1.9 33315 1u84A 90 1.85e+01 2aexA 346 1.86e+01 2ew2A 316 1.88e+01 1lm6A 215 1.95e+01 d.167.1.1 84628 1qa7A 217 1.98e+01 1havA b.47.1.4 26425 1fa8A 135 2.06e+01 1qipA d.32.1.1 38486 1oivA 191 2.10e+01 c.37.1.8 93076 1wucA 250 2.18e+01 1ufbA 127 2.20e+01 a.24.16.3 99331 1u0kA 288 2.20e+01 d.21.1.2,d.21.1.2 107547,107548 2bvlA 543 2.20e+01 1wgoA 123 2.20e+01 1ac5 483 2.23e+01 1ac5 c.69.1.5 34653 1pzsA 208 2.26e+01 b.1.8.1 104397 1m7vA 363 2.27e+01 d.174.1.1 78748 2dddA 225 2.29e+01 2cxkA 95 2.32e+01 1a7cA 379 2.33e+01 1sek e.1.1.1 42660 1ju3A 583 2.34e+01 b.18.1.13,c.69.1.21 67300,67301 1a02N 301 2.34e+01 1a02N b.1.18.1,b.2.5.3 21923,22440 2stv 195 2.36e+01 2stv b.121.7.1 23287 2bukA 196 2.36e+01 1u1wA 298 2.38e+01 1xssA 225 2.42e+01 1xs1A 193 2.48e+01 1u2hA 99 2.48e+01 1budA 197 2.49e+01 1atlA d.92.1.9 40328 1v58A 241 2.53e+01 c.47.1.9,d.17.3.1 108371,108372 1cwvA 492 2.56e+01 1cwvA b.1.14.1,b.1.14.1,b.1.14.1,b.1.14.1,d.169.1.3 22373,22374,22375,22376,42442 1mixA 206 2.58e+01 a.11.2.1,b.55.1.5 79166,79167 2gc9A 179 2.72e+01 7fd1A 106 2.81e+01 1a6l d.58.1.2 38953 1js8A 394 2.81e+01 a.86.1.1,b.112.1.1 67219,67220 1g8iA 190 2.94e+01 1rec a.39.1.5 60363 1f9zA 135 2.97e+01 1qipA d.32.1.1 38484 1voqa 90 3.00e+01 1o91A 178 3.03e+01 b.22.1.1 92656 1havA 217 3.04e+01 1havA b.47.1.4 26423 1prxA 224 3.19e+01 1prxA c.47.1.10 33076 1lshA 1056 3.25e+01 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1ffa 214 3.44e+01 1cex c.69.1.30 31289 2g30A 258 3.51e+01 1exmA 405 3.54e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 1vlrA 350 3.57e+01 d.13.1.3,d.246.1.1 108860,108861 1oixA 191 3.60e+01 1ca1 370 3.62e+01 1ca1 a.124.1.1,b.12.1.3 19340,23648 1kk1A 410 3.69e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 2ae0X 345 3.80e+01 1f9yA 158 3.83e+01 d.58.30.1 83249 1eqoA 158 3.83e+01 1hka 1x6zA 123 3.98e+01 1suwA 249 3.99e+01 e.52.1.1 106027 1d3bA 75 4.06e+01 1d3bA b.38.1.1 24798 1ltsA 185 4.06e+01 1lt3A d.166.1.1 42229 1x1nA 524 4.17e+01 1ux8A 132 4.24e+01 2c78A 405 4.29e+01 2cr4A 126 4.35e+01 3dni 260 4.36e+01 3dni d.151.1.1 41791 1ha3A 405 4.39e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 60869,60870,60871 1fo8A 343 4.40e+01 1foaA c.68.1.10 59927 1cex 214 4.41e+01 1cex c.69.1.30 31285 1r7lA 110 4.41e+01 d.277.1.1 104837 1ta3A 274 4.44e+01 c.1.8.5 106731 1pmhX 185 4.68e+01 b.18.1.18 104193 1q48A 134 4.69e+01 d.224.1.2 95783 2bjqA 345 4.82e+01 1ov3A 138 4.85e+01 b.34.2.1,b.34.2.1 87451,87452 1l5jA 865 4.88e+01 a.118.15.1,c.8.2.1,c.83.1.1 73592,73593,73594 1ukvY 206 4.89e+01 c.37.1.8 107918 1orrA 347 4.92e+01 c.2.1.2 93460 2bh1A 250 4.99e+01 1m7xA 617 4.99e+01 b.1.18.2,b.71.1.1,c.1.8.1 78749,78750,78751 2cxvA 219 5.00e+01 1j5wA 298 5.03e+01 d.104.1.1 71589 1g60A 260 5.09e+01 c.66.1.11 70151 1ciy 590 5.09e+01 1ciy b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 1pnsC 206 5.42e+01 i.1.1.1 88170 1gyvA 120 5.42e+01 b.1.10.2 70790 1z0sA 278 5.44e+01 1xvaA 292 5.48e+01 1xvaA c.66.1.5 34183 1reqB 637 5.51e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 2fggA 101 5.52e+01 2bcgY 206 5.56e+01 1p49A 562 5.67e+01 c.76.1.2 94089 1x99A 145 5.68e+01 2a40B 260 5.73e+01 1otgA 125 5.76e+01 1otgA d.80.1.2 39831 2f2hA 773 5.78e+01 1o0wA 252 5.78e+01 a.149.1.1,d.50.1.1 80751,80752 1mi3A 322 5.83e+01 c.1.7.1 91274 1qwtA 255 5.90e+01 b.26.1.3 96501 2a7bA 120 5.90e+01 1ym5A 300 5.91e+01 1b5pA 385 6.04e+01 c.67.1.1 90403 1feuA 206 6.12e+01 1feuA b.53.1.1 59801 2bz1A 196 6.14e+01 1odmA 331 6.24e+01 b.82.2.1 86875 1bk0 331 6.24e+01 1bk0 b.82.2.1 28118 1y43A 39 6.49e+01 1iq4A 179 6.51e+01 1iq4A d.77.1.1 62641 2fsjA 346 6.52e+01 1bs4A 168 6.58e+01 1bs4A d.167.1.1 42287 1erjA 393 6.62e+01 1erjA b.69.4.1 27660 1dhkB 223 6.65e+01 1led b.29.1.1 24157 1lf6A 684 6.65e+01 a.102.1.5,b.30.5.5 77918,77919 1kay 381 6.77e+01 1ba1 c.55.1.1,c.55.1.1 33385,33386 1xsjA 778 6.81e+01 1bupA 386 6.82e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 1z5zA 271 6.84e+01 1avbA 226 6.86e+01 1led b.29.1.1 24158 1adjA 421 6.88e+01 1adjA c.51.1.1,d.104.1.1 33188,40737 1xeoA 168 6.93e+01 1ospO 257 6.94e+01 1ospO b.76.1.1 27971 2gaeA 346 7.06e+01 1dzoA 123 7.10e+01 1dzoA d.24.1.1 38378 1v25A 541 7.17e+01 e.23.1.1 108275 2g1lA 104 7.25e+01 2g6tA 306 7.29e+01 1zn6A 227 7.38e+01 1l1jA 239 7.39e+01 b.47.1.1 84516 1tg7A 971 7.46e+01 1smxA 96 7.49e+01 b.40.4.5 105772 1qmyA 167 7.54e+01 1qmyA d.3.1.2 37094 1ut1A 148 7.57e+01 b.2.3.6 108014 1yobA 179 7.62e+01 1nvmB 312 7.72e+01 c.2.1.3,d.81.1.1 86251,86252 2fclA 169 7.77e+01 2ewrA 170 7.78e+01 1j2jB 45 7.78e+01 a.7.8.1 84017 1qhlA 227 7.79e+01 1qhlA c.37.1.12 32382 1vj0A 380 7.80e+01 b.35.1.2,c.2.1.1 100786,100787 1ax0 239 7.81e+01 1led b.29.1.1 24042 1ttwA 138 7.82e+01 d.198.1.1 107308 1n9lA 109 7.85e+01 d.110.3.6 85468 1umzA 278 7.91e+01 b.29.1.2 99639 1zz1A 369 7.92e+01 1yroB 286 7.92e+01 1rerA 391 7.96e+01 b.1.18.4,f.10.1.1 97327,97328 1vraA 208 8.09e+01 1egaA 301 8.14e+01 1egaA c.37.1.8,d.52.3.1 32150,38836 2agdA 287 8.16e+01 1xbrA 184 8.17e+01 1xbrA b.2.5.4 22458 1nznA 126 8.19e+01 a.118.8.1 92382 1om0A 274 8.20e+01 c.1.8.5 87058 1dl5A 317 8.25e+01 1dl5A c.66.1.7,d.197.1.1 64720,64721 1t6kA 278 8.34e+01 1y6hA 177 8.36e+01 1e2wA 251 8.36e+01 1hcz b.2.6.1,b.84.2.2 22466,28252 1uisA 231 8.45e+01 d.22.1.1 99431 2sli 679 8.53e+01 2sli b.29.1.9,b.68.1.1 24274,27611 1g291 372 8.55e+01 1g291 1q8iA 783 8.58e+01 c.55.3.5,e.8.1.1 96208,96209 1eijA 80 8.59e+01 1eijA a.5.6.1 16298 2c6cA 707 8.60e+01 1ogsA 497 8.71e+01 b.71.1.2,c.1.8.3 86997,86998 1g2aA 168 8.84e+01 d.167.1.1 65109 1uj2A 252 8.86e+01 c.37.1.6 99452 1led 243 8.90e+01 1led b.29.1.1 24039 1ll7A 392 8.96e+01 c.1.8.5,d.26.3.1 78085,78086 1abrA 251 8.98e+01 1mrj d.165.1.1 42196