# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gkeA 274 7.84e-03 1bwzA 274 8.80e-03 1bwzA d.21.1.1,d.21.1.1 38337,38338 1gqzA 274 1.29e-02 d.21.1.1,d.21.1.1 83311,83312 1qyaA 307 4.14e-01 d.21.1.2,d.21.1.2 104653,104654 1w61A 414 6.51e-01 1h21A 247 9.17e-01 a.138.1.3 76510 1sdjA 310 1.28e+00 d.21.1.2,d.21.1.2 98807,98808 1z0sA 278 6.78e+00 1ak0 270 8.97e+00 1ak0 a.124.1.2 19345 1mkeA 152 1.18e+01 b.55.1.4 79231 1suwA 249 1.21e+01 e.52.1.1 106027 1qqsA 174 1.21e+01 1nglA b.60.1.1 27143 1nw1A 429 1.26e+01 d.144.1.8 86286 1x1nA 524 1.27e+01 1c0eA 157 1.28e+01 1dg9A c.44.1.1 32638 1nznA 126 1.29e+01 a.118.8.1 92382 2fbeA 201 1.52e+01 1t6kA 278 1.64e+01 1xubA 298 1.68e+01 1kyhA 276 1.69e+01 c.72.1.4 73222 2cr4A 126 1.77e+01 1u1wA 298 1.98e+01 1xfjA 261 2.01e+01 d.194.1.2 109585 1x89A 178 2.13e+01 2g6yA 217 2.18e+01 1spxA 278 2.32e+01 c.2.1.2 98958 2cw8A 537 2.33e+01 1pqhA 143 2.47e+01 b.52.2.1 95017 1x71A 178 2.49e+01 1shyB 551 2.50e+01 b.69.12.1,g.16.2.1 105565,105566 1ci3M 249 2.59e+01 1hcz b.2.6.1,b.84.2.2 22480,28266 1e5xA 486 2.62e+01 c.79.1.1 59283 1i2sA 282 2.83e+01 e.3.1.1 71104 1d6jA 211 2.96e+01 1d6jA c.37.1.4 31940 4blmA 265 3.39e+01 1btl e.3.1.1 42721 1pg6A 243 3.47e+01 b.82.5.2 94673 1zowA 313 3.53e+01 2cxhA 217 3.57e+01 1s7jA 262 3.69e+01 d.21.1.2 98647 1iapA 211 3.79e+01 a.91.1.1 62119 1f15A 218 3.87e+01 1f15B b.121.4.5 23320 1ufbA 127 4.00e+01 a.24.16.3 99331 1oqqA 106 4.01e+01 d.15.4.1 93422 1kcfA 258 4.04e+01 a.140.2.1,c.55.3.7 68434,68435 1c44A 123 4.20e+01 1qndA d.106.1.1 40795 1gw5A 621 4.62e+01 a.118.1.10 70629 1y9kA 157 4.62e+01 1m6eX 359 4.69e+01 c.66.1.35 91188 1hnjA 317 4.76e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 1zynA 202 4.83e+01 1f8fA 371 5.26e+01 b.35.1.2,c.2.1.1 83246,83247 1fjgL 135 5.39e+01 1fjfL b.40.4.5 25346 1xlqA 106 5.48e+01 1xd8A 289 5.56e+01 1h16A 759 5.66e+01 c.7.1.1 76462 1lf2A 331 5.81e+01 b.50.1.2 77914 1ygaA 342 6.09e+01 1i1dA 161 6.14e+01 1i21A d.108.1.1 61526 1v3hA 495 6.26e+01 c.1.8.1 108303 1j8fA 323 6.42e+01 1j8fA c.31.1.5 62738 1ut9A 609 6.58e+01 a.102.1.2,b.1.18.2 99912,99913 1uj6A 227 6.58e+01 c.124.1.4,d.58.40.1 107898,107899 1dg9A 157 6.74e+01 1dg9A c.44.1.1 32637 1nc5A 373 6.86e+01 a.102.1.6 85548 1xwwA 157 6.93e+01 1x9iA 302 6.97e+01 1ia9A 280 7.02e+01 1ia9A d.144.1.5 62113 1b24A 188 7.18e+01 1b24A d.95.2.1,d.95.2.1 40573,40574 1p9eA 331 7.23e+01 d.157.1.5 104088 5eau 548 7.25e+01 5eat a.102.4.1,a.128.1.3 18851,19443 1tzbA 302 7.32e+01 c.80.1.1 107470 1zhvA 134 7.36e+01 2f2bA 246 7.47e+01 1cp2A 269 7.67e+01 1cp2A c.37.1.10 32269 1a05A 358 7.69e+01 1cnzA c.77.1.1 35059 1i7pA 274 7.69e+01 b.43.4.2,c.25.1.1 66048,66049 1zm8A 259 7.72e+01 1s55A 156 7.74e+01 2c2nA 339 7.75e+01 1mrp 309 8.04e+01 1mrp c.94.1.1 35796 1di6A 195 8.07e+01 1di6A c.57.1.1 33863 1i12A 160 8.09e+01 1i21A d.108.1.1 61515 1nzjA 298 8.15e+01 c.26.1.1 92377 1w9hA 427 8.23e+01 1b12A 248 8.24e+01 1b12A b.87.1.2 28388 1byb 495 8.61e+01 1byb c.1.8.1 28790 1g2iA 166 8.63e+01 1g2iA c.23.16.2 31438 1q6cA 495 8.70e+01 c.1.8.1 95970 1y2kA 349 8.71e+01 1o2dA 371 8.80e+01 e.22.1.2 86591 1ri7A 171 8.86e+01 a.4.5.32,d.58.4.2 97504,97505 1qfxA 460 8.99e+01 1qfxA c.60.1.2 33994