Best Alignments for T0301

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2gkeA/T0301-2gkeA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gkeA/T0301-2gkeA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.1994e-022.64e-17
1xubA/T0301-1xubA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xubA/T0301-1xubA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.4644e-023.10e-18
1gqzA/T0301-1gqzA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gqzA/T0301-1gqzA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.8884e-023.01e-19 d.21.1.1
d.21.1.1
1oe4A/T0301-1oe4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1oe4A/T0301-1oe4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4195e+002.58e-07 c.18.1.3
1sr8A/T0301-1sr8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1sr8A/T0301-1sr8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.7990e+007.08e-08 e.54.1.1
1hzdA/T0301-1hzdA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1hzdA/T0301-1hzdA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.6256e+001.51e-05 c.14.1.3
1gtzA/T0301-1gtzA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gtzA/T0301-1gtzA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.9099e+007.37e-05 c.23.13.1
1dkmA/T0301-1dkmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1dkmA/T0301-1dkmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0741e+011.48e-08 1dklA c.60.1.2
1sdjA/T0301-1sdjA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1sdjA/T0301-1sdjA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2000e+011.11e-12 d.21.1.2
d.21.1.2
1j5pA/T0301-1j5pA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1j5pA/T0301-1j5pA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.6160e+011.38e-09 d.81.1.3
c.2.1.3

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001