# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gkeA 274 7.22e-03 1gqzA 274 9.28e-03 d.21.1.1,d.21.1.1 83311,83312 1xubA 298 8.38e-02 1pzgA 331 3.88e-01 c.2.1.5,d.162.1.1 95425,95426 1qx4A 274 8.45e-01 b.43.4.2,c.25.1.1 104624,104625 1oe4A 247 9.13e-01 c.18.1.3 86895 1kkoA 413 1.04e+00 c.1.11.2,d.54.1.1 68675,68676 1ixlA 131 1.37e+00 d.38.1.5 90717 1gtzA 156 1.51e+00 c.23.13.1 70539 1nnxA 109 1.95e+00 b.40.10.1 92013 1qd1A 325 3.03e+00 1qd1A d.58.34.1,d.58.34.1 39493,39494 1xjvA 294 3.10e+00 1ep3B 262 3.15e+00 1ep2B b.43.4.2,c.25.1.3 25664,31554 1sr8A 298 3.53e+00 e.54.1.1 105959 1evhA 112 3.89e+00 1evhA b.55.1.4 26997 1snzA 344 4.77e+00 b.30.5.4 98930 1lqaA 346 4.87e+00 c.1.7.1 84674 1umkA 275 5.01e+00 1nnsA 326 6.30e+00 c.88.1.1 85910 1s5jA 847 6.42e+00 1othA 321 7.01e+00 1othA c.78.1.1,c.78.1.1 35260,35261 1pgyA 47 7.14e+00 a.5.2.1 94696 1a2zA 220 7.33e+00 1a2zA c.56.4.1 33794 1q6uA 245 7.54e+00 d.26.1.1 95998 1mpxA 615 7.57e+00 b.18.1.13,c.69.1.21 85041,85042 1je5A 206 7.64e+00 1je5A b.40.4.7 62909 1sdjA 310 8.76e+00 d.21.1.2,d.21.1.2 98807,98808 1dnv 437 9.44e+00 1dnv b.121.5.3 23332 1f6fA 199 9.67e+00 1f6fA a.26.1.1 16839 1g55A 343 1.24e+01 1g55A c.66.1.26 34247 1mkiA 330 1.24e+01 e.3.1.2 84994 1uwkA 557 1.35e+01 e.51.1.1 108065 1jogA 146 1.37e+01 a.24.16.2 77142 1o6sB 105 1.42e+01 b.1.6.1 81096 1vljA 407 1.43e+01 e.22.1.2 108832 1pjxA 314 1.50e+01 b.68.6.1 104167 1q5zA 177 1.55e+01 a.196.1.1 95954 1nkpA 88 1.59e+01 a.38.1.1 80573 1b00A 127 1.60e+01 3chy c.23.1.1 31122 1jhjA 171 1.68e+01 b.18.1.9 66714 1dosA 358 1.72e+01 1dosA c.1.10.2 29175 16pk 415 1.73e+01 16pk c.86.1.1 35454 1quuA 250 1.76e+01 1quuA a.7.1.1,a.7.1.1 16320,16321 1hzdA 272 1.76e+01 c.14.1.3 65969 1q4gA 553 1.79e+01 a.93.1.2,g.3.11.1 95789,95790 1qgvA 142 1.81e+01 1qgvA c.47.1.8 33056 1c4rA 182 1.99e+01 1c4rA b.29.1.4 24229 1s4cA 155 2.00e+01 1izmA 184 2.08e+01 a.199.1.1 90725 1m6sA 347 2.28e+01 c.67.1.1 78701 1s12A 94 2.48e+01 1nf2A 268 2.49e+01 c.108.1.10 91849 1kkhA 317 2.50e+01 d.14.1.5,d.58.26.3 72645,72646 1pvvA 315 2.58e+01 c.78.1.1,c.78.1.1 95190,95191 1oohA 126 2.62e+01 a.39.2.1 93383 1oi7A 288 2.63e+01 c.2.1.8,c.23.4.1 87049,87050 1vdkA 466 2.70e+01 a.127.1.1 100561 1dp4A 435 2.77e+01 1dp4A c.93.1.1 35710 1q6hA 224 2.80e+01 d.26.1.1 95975 1oi6A 205 2.86e+01 b.82.1.1 103940 1pbyA 489 2.87e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 94417,94418,94419,94420,94421 1dkqA 410 3.10e+01 1dklA c.60.1.2 33998 1j5pA 253 3.20e+01 d.81.1.3,c.2.1.3 71577,83092 1kpf 126 3.20e+01 1kpf d.13.1.1 37507 1rdfA 267 3.21e+01 c.108.1.3 104884 1svmA 377 3.28e+01 1p3dA 475 3.35e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1ef8A 261 3.42e+01 1ef8A c.14.1.3 30921 1jqnA 883 3.45e+01 c.1.12.3 77159 1mkmA 249 3.61e+01 a.4.5.33,d.110.2.2 79242,79243 1hx0A 496 3.67e+01 b.71.1.1,c.1.8.1 61346,61347 1bxyA 60 3.78e+01 1bxyA d.59.1.1 39525 2dfkA 402 3.81e+01 1xttA 216 3.92e+01 1kamA 194 3.93e+01 c.26.1.3 72254 1rsy 152 3.99e+01 1rsy b.7.1.2 23192 1swvA 267 4.12e+01 1s1qA 145 4.15e+01 d.20.1.2 98351 1cxzB 86 4.15e+01 1cxzB a.2.6.1 15705 1mdl 359 4.22e+01 2mnr c.1.11.2,d.54.1.1 29247,38891 1m32A 366 4.24e+01 c.67.1.3 78508 1jf9A 408 4.26e+01 1c0nA c.67.1.3 62931 1od3A 168 4.28e+01 b.18.1.10 86825 1mqvA 125 4.36e+01 a.24.3.2 79415 1sknP 92 4.37e+01 1sknP a.37.1.1 17127 1pzsA 208 4.43e+01 b.1.8.1 104397 1s2xA 206 4.53e+01 a.47.3.1 105229 1r44A 202 4.60e+01 d.65.1.4 104787 1ja9A 274 4.71e+01 c.2.1.2 62817 1t0qC 86 4.81e+01 d.15.12.1 106222 1p2hA 571 4.85e+01 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 1rq2A 382 4.85e+01 c.32.1.1,d.79.2.1 105048,105049 1y8aA 332 4.98e+01 1rzuA 485 5.02e+01 c.87.1.8 105140 1dkmA 410 5.04e+01 1dklA c.60.1.2 34000 1j1jA 240 5.36e+01 a.118.16.1 90762 1k6dA 220 5.46e+01 c.124.1.2 72082 1tw9A 206 5.46e+01 a.45.1.1,c.47.1.5 107381,107382 1guzA 310 5.64e+01 c.2.1.5,d.162.1.1 65586,65587 1q8fA 313 5.84e+01 c.70.1.1 96203 1pixA 587 5.90e+01 c.14.1.4 94708 1k8kE 178 6.02e+01 a.148.1.1 68311 1cqxA 403 6.06e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1nnvA 110 6.12e+01 d.17.7.1 92012 1k66A 149 6.28e+01 c.23.1.1 90941 1bhe 376 6.37e+01 1bhe b.80.1.3 28030 1qyaA 307 6.38e+01 d.21.1.2,d.21.1.2 104653,104654 1h5uA 842 6.43e+01 1a8i c.87.1.4 60655 1jv1A 505 6.45e+01 c.68.1.5 71892 1jc9A 269 6.72e+01 d.171.1.1 66490 1gt1A 159 6.82e+01 b.60.1.1 90515 1vkkA 154 7.00e+01 d.109.1.2 108669 1cfzA 162 7.12e+01 1cfzA c.56.1.1 33754 1senA 164 7.15e+01 c.47.1.1 105465 1kvkA 395 7.15e+01 d.14.1.5,d.58.26.3 73060,73061 1j6rA 214 7.17e+01 d.173.1.2 71598 1b56 135 7.25e+01 1hmt b.60.1.2 27183 1jfbA 404 7.36e+01 a.104.1.1 66624 1svvA 359 7.42e+01 c.67.1.1 106054 1iu8A 206 7.59e+01 c.56.4.1 71436 2pvbA 107 7.62e+01 1a75A a.39.1.4 17205 1prxA 224 7.64e+01 1prxA c.47.1.10 33076 1dhn 121 7.68e+01 1dhn d.96.1.3 40663 1pfsA 78 7.77e+01 1pfsA b.40.4.7 25391 1ubkL 534 7.89e+01 e.18.1.1 88422 1fvkA 189 8.02e+01 1fvkA c.47.1.13 90351 1l7vA 326 8.04e+01 f.22.1.1 73672 1vyiA 112 8.06e+01 1i0rA 169 8.10e+01 1i0rA b.45.1.2 61489 1nqkA 381 8.10e+01 c.1.16.4 92050 1fuxA 166 8.18e+01 1fjjA b.17.1.2 60034 1rreA 200 8.40e+01 d.14.1.10 97791 1m40A 263 8.42e+01 e.3.1.1 74437 1jfmA 174 8.47e+01 d.19.1.1 66640 1x7yB 342 8.80e+01 1pbuA 162 8.84e+01 d.58.46.1 88030 1t3gA 159 8.84e+01 1r5eA 115 8.96e+01 1kk1A 410 8.98e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636