# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xubA 298 4.95e-03 2gkeA 274 1.84e-02 1gqzA 274 2.59e-02 d.21.1.1,d.21.1.1 83311,83312 1ixlA 131 4.17e-01 d.38.1.5 90717 1dkmA 410 4.74e-01 1dklA c.60.1.2 34000 1dkqA 410 6.36e-01 1dklA c.60.1.2 33998 1umkA 275 1.84e+00 1sr8A 298 1.92e+00 e.54.1.1 105959 1vdkA 466 1.93e+00 a.127.1.1 100561 1o17A 345 1.96e+00 a.46.2.1,c.27.1.1 80765,80766 1qstA 160 2.21e+00 1yghA d.108.1.1 40804 1giqA 413 2.30e+00 d.166.1.1,d.166.1.1 76224,76225 1gtzA 156 2.80e+00 c.23.13.1 70539 1oe4A 247 2.81e+00 c.18.1.3 86895 1qx4A 274 3.59e+00 b.43.4.2,c.25.1.1 104624,104625 1bupA 386 4.15e+00 1ba1 c.55.1.1,c.55.1.1 33377,33378 1ryiA 382 4.24e+00 1p3dA 475 4.32e+00 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1o8bA 219 4.90e+00 c.124.1.4,d.58.40.1 81180,81181 1g5cA 170 5.73e+00 1g5cA c.53.2.1 60264 1ab8A 220 6.10e+00 1azsA d.58.29.1 39414 1dp4A 435 6.50e+00 1dp4A c.93.1.1 35710 1ogsA 497 6.95e+00 b.71.1.2,c.1.8.3 86997,86998 1mqvA 125 7.02e+00 a.24.3.2 79415 1xttA 216 7.50e+00 1khdA 345 7.82e+00 a.46.2.1,c.27.1.1 77400,77401 1hzdA 272 7.88e+00 c.14.1.3 65969 1nnsA 326 8.58e+00 c.88.1.1 85910 1od3A 168 8.79e+00 b.18.1.10 86825 1josA 128 9.21e+00 d.52.7.1 84191 1prxA 224 1.03e+01 1prxA c.47.1.10 33076 1mngA 203 1.06e+01 1avmA a.2.11.1,d.44.1.1 15776,38701 1lo7A 141 1.06e+01 d.38.1.1 74144 1o7nA 449 1.17e+01 b.33.1.2,d.129.3.3 81162,81163 1rl0A 255 1.21e+01 1q3iA 214 1.33e+01 d.220.1.1 104524 1g7sA 594 1.42e+01 1g7rA b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 1h65A 270 1.46e+01 c.37.1.8 65640 1fnnA 389 1.46e+01 1fnnA a.4.5.11,c.37.1.20 16129,32426 1jb7A 495 1.49e+01 1otcA b.40.4.3,b.40.4.3,b.40.4.3 62836,62837,62838 1h8eA 510 1.51e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1sdjA 310 1.54e+01 d.21.1.2,d.21.1.2 98807,98808 1sk4A 163 1.57e+01 d.118.1.1 105664 1kq3A 376 1.58e+01 e.22.1.2 68790 1vh5A 148 1.58e+01 d.38.1.5 100642 1qjtA 99 1.58e+01 1eh2 a.39.1.6 17335 1tq5A 242 1.60e+01 1ekjA 221 1.73e+01 1ekjB c.53.2.1 33364 1q1rA 431 1.75e+01 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1mxmA 254 1.76e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 1rsy 152 1.81e+01 1rsy b.7.1.2 23192 1pzsA 208 1.82e+01 b.1.8.1 104397 1q15A 503 1.83e+01 c.26.2.1,d.153.1.1 95538,95539 1tafB 70 1.94e+01 1tafB a.22.1.3 16482 1pyoA 167 1.95e+01 c.17.1.1 95370 1o0iA 138 2.00e+01 d.38.1.5 86532 1g9oA 91 2.10e+01 1pdr b.36.1.1 60400 1es9A 232 2.14e+01 1wab c.23.10.3 31340 1on3A 523 2.23e+01 c.14.1.4,c.14.1.4 87107,87108 1jc9A 269 2.25e+01 d.171.1.1 66490 1cl8A 276 2.26e+01 1ckqA c.52.1.1 33230 1jihA 531 2.34e+01 d.240.1.1,e.8.1.7 90374,90375 1nbwA 607 2.43e+01 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 1vpbA 451 2.44e+01 1izmA 184 2.45e+01 a.199.1.1 90725 1srqA 341 2.50e+01 e.55.1.1 105967 1j1yA 136 2.50e+01 d.38.1.5 90776 1evhA 112 2.51e+01 1evhA b.55.1.4 26997 1iicA 422 2.52e+01 1nmtA d.108.1.2,d.108.1.2 62422,62423 1j5pA 253 2.61e+01 d.81.1.3,c.2.1.3 71577,83092 1k0eA 453 2.64e+01 d.161.1.1 67938 1pjcA 361 2.86e+01 1sayA c.2.1.4,c.23.12.2 30101,31361 1hbnC 248 2.98e+01 1mroC d.58.31.1 60902 1m2oA 768 3.00e+01 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 1hf2A 210 3.02e+01 1hf2A b.80.3.1,c.102.1.1 60992,60993 1jf9A 408 3.02e+01 1c0nA c.67.1.3 62931 1h2eA 207 3.04e+01 c.60.1.1 70857 1w96A 554 3.07e+01 1vl2A 421 3.19e+01 c.26.2.1,d.210.1.1 108708,108709 1to6A 371 3.21e+01 c.141.1.1 107170 1ejeA 192 3.32e+01 1ejeA b.45.1.2 25757 1wvgA 359 3.32e+01 1s1qA 145 3.52e+01 d.20.1.2 98351 1h9dB 134 3.54e+01 2jhbA b.54.1.1 60822 1fs5A 266 3.54e+01 c.124.1.1 65044 1lyqA 104 3.55e+01 b.1.18.17 78302 1i78A 297 3.63e+01 f.4.4.1 66046 1oa8A 133 3.70e+01 b.145.1.1 92698 1gy8A 397 3.71e+01 c.2.1.2 83376 1ash 150 3.71e+01 1ash a.1.1.2 15622 1k8kE 178 3.80e+01 a.148.1.1 68311 1b56 135 3.81e+01 1hmt b.60.1.2 27183 1r5eA 115 3.81e+01 1lk5A 229 3.96e+01 c.124.1.4,d.58.40.1 73960,73961 4uagA 437 3.97e+01 4uagA c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1k24A 253 4.02e+01 f.4.4.2 72002 1eajA 126 4.07e+01 1f5wA b.1.1.1 59401 1s4bP 674 4.25e+01 d.92.1.5 105252 1hp1A 516 4.26e+01 d.114.1.1,d.159.1.2 70976,70977 1svy 114 4.28e+01 1svy d.109.1.1 40831 1oruA 195 4.30e+01 b.58.1.2 93464 1f3uA 118 4.30e+01 1f3uA b.65.1.1 27521 1pfsA 78 4.35e+01 1pfsA b.40.4.7 25391 1gk8I 140 4.36e+01 d.73.1.1 65242 1i1nA 226 4.46e+01 c.66.1.7 71102 1drw 273 4.47e+01 1drw c.2.1.3,d.81.1.3 30057,39972 2biqA 219 4.49e+01 1t6aA 126 4.56e+01 d.129.8.1 106555 1tt8A 164 4.64e+01 1v8hA 107 4.66e+01 1d4tA 104 4.67e+01 1d4tA d.93.1.1 40537 1nnxA 109 4.69e+01 b.40.10.1 92013 1iznB 277 4.70e+01 e.43.1.2 83848 1tuhA 156 4.75e+01 d.17.4.11 107345 1rzhL 281 4.77e+01 f.26.1.1 98164 1oo0A 147 4.83e+01 d.232.1.1 87182 1qxfA 66 4.91e+01 g.41.8.4 96527 1dpgA 485 4.99e+01 1dpgA c.2.1.3,d.81.1.5 30074,39989 1l5oA 356 5.00e+01 c.39.1.1 77711 2ck3A 510 5.01e+01 1gmuA 143 5.04e+01 b.107.1.1,d.58.38.1 65335,65336 1j0hA 588 5.11e+01 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1t8hA 277 5.15e+01 d.194.1.2 106664 1ju2A 536 5.18e+01 c.3.1.2,d.16.1.1 77169,77170 1kg0C 136 5.22e+01 d.169.1.1 72445 1jb7B 260 5.40e+01 1otcB b.40.4.3 62839 1eu1A 780 5.44e+01 1dmr b.52.2.2,c.81.1.1 26903,35311 1cghA 224 5.45e+01 1a7s b.47.1.2 26290 1eq9A 222 5.60e+01 5ptp b.47.1.2 26068 1h5uA 842 5.61e+01 1a8i c.87.1.4 60655 1ftrA 296 5.66e+01 1ftrA d.58.33.1,d.58.33.1 39485,39486 1tcvA 287 5.68e+01 1nh0A 99 5.70e+01 b.50.1.1 91869 1ri5A 298 5.71e+01 c.66.1.34 97502 1v9yA 167 5.72e+01 d.110.3.2 108454 1nziA 159 5.73e+01 b.23.1.1,g.3.11.1 86449,86450 1q87A 221 5.76e+01 e.47.1.1 96192 1q1fA 151 5.80e+01 a.1.1.2 104476 1a9xA 1058 5.82e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1rzuA 485 5.85e+01 c.87.1.8 105140 1b65A 375 5.86e+01 1b65A d.154.1.1 42020 1ir21 140 5.94e+01 1kr7A 110 5.97e+01 a.1.1.4 72890 1kqfA 1015 6.00e+01 b.52.2.2,c.81.1.1 72871,72872 1hekA 131 6.13e+01 a.61.1.5 65818 1svdA 473 6.17e+01 1c96A 753 6.27e+01 1amj c.8.2.1,c.83.1.1 30727,35403 1mp9A 198 6.30e+01 d.129.1.1,d.129.1.1 91385,91386 1rylA 167 6.33e+01 d.276.1.1 105124 1rkqA 282 6.34e+01 c.108.1.10 97621 1rwiA 270 6.35e+01 b.68.9.1 97987 1us0A 316 6.37e+01 c.1.7.1 99850 1b7yA 350 6.38e+01 1pysA d.104.1.1 40776 1pjxA 314 6.38e+01 b.68.6.1 104167 1g0sA 209 6.43e+01 1g0sA d.113.1.1 60187 1tu1A 148 6.47e+01 d.107.1.3 107316 1m4jA 142 6.50e+01 d.109.1.2 78602 1woqA 267 6.59e+01 c.55.1.10,c.55.1.10 109462,109463 1ubkL 534 6.62e+01 e.18.1.1 88422 1ecfA 504 6.68e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 1moq 368 6.73e+01 1moq c.80.1.1 35302 1lshA 1056 6.76e+01 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1s0yB 71 6.77e+01 d.80.1.1 98315 1q6hA 224 6.78e+01 d.26.1.1 95975 2blnA 305 6.78e+01 1avyA 74 6.83e+01 1avyB h.1.17.1 45656 1jx4A 352 6.88e+01 d.240.1.1,e.8.1.7 90378,90379 1evlA 401 6.96e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1nowA 507 6.99e+01 c.1.8.6,d.92.2.1 85936,85937 1tjyA 316 6.99e+01 c.93.1.1 107062 1mqoA 227 7.05e+01 d.157.1.1 103846 1fc6A 388 7.08e+01 1fc6A b.36.1.3,c.14.1.2 64738,64739 1sg6A 393 7.09e+01 e.22.1.1 105522 1esc 306 7.18e+01 1esc c.23.10.1 31334 1h9oA 112 7.20e+01 1qadA d.93.1.1 60837 1o7iA 119 7.37e+01 b.40.4.3 86642 1d7oA 297 7.38e+01 1enp c.2.1.2 29907 1f3uB 171 7.44e+01 1f3uB b.65.1.1 27525 1pwaA 162 7.48e+01 b.42.1.1 95211 1sefA 274 7.57e+01 b.82.1.11 105452 1t7vA 278 7.62e+01 1sh8A 154 7.62e+01 d.38.1.5 105549 1n3lA 372 7.68e+01 c.26.1.1 79966 1m0uA 249 7.68e+01 a.45.1.1,c.47.1.5 78359,78360 1a0cA 438 7.70e+01 1a0cA c.1.15.3 29529 1wdvA 152 7.70e+01 1f6bA 198 7.71e+01 c.37.1.8 64986 1n0wA 243 7.75e+01 c.37.1.11 79772 1tw9A 206 7.76e+01 a.45.1.1,c.47.1.5 107381,107382 1mtpA 323 7.77e+01 e.1.1.1 85107 1q79A 514 7.80e+01 a.160.1.1,d.218.1.3,d.58.16.1 104548,104549,104550 1q4gA 553 7.91e+01 a.93.1.2,g.3.11.1 95789,95790 1e3dB 542 7.93e+01 1h2rL e.18.1.1 59189 1sziA 247 7.95e+01 a.24.23.1 106159 1fjgK 129 7.97e+01 1fjfK c.55.4.1 33733 1bdo 80 8.09e+01 1bdo b.84.1.1 28214 1ig8A 486 8.20e+01 2yhx c.55.1.3,c.55.1.3 64746,64747 1sg4A 260 8.22e+01 1hf8A 289 8.26e+01 1hg5A a.7.8.2,a.118.9.3 90354,90355 1js1X 324 8.40e+01 c.78.1.1,c.78.1.1 71834,71835 1lm4A 194 8.40e+01 d.167.1.1 84626 1snzA 344 8.41e+01 b.30.5.4 98930 1sz7A 200 8.64e+01 1tkeA 224 8.74e+01 1m7sA 484 8.76e+01 e.5.1.1 74574 1n2eA 300 8.78e+01 c.26.1.4 85268 1cs0A 1073 8.87e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1spf 35 8.90e+01 1spf j.35.1.1 46254 1tw7A 99 8.98e+01